Strain Fitness in Shewanella amazonensis SB2B around Sama_2852

Experiment: Cobalt chloride 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cobalt chloride 0.078125 mM
3,390,701	+		Sama_2851	0.40	+1.1
3,390,702	-		Sama_2851	0.40	-1.7
3,390,702	-		Sama_2851	0.40	+0.1
3,390,705	+		Sama_2851	0.40	+1.5
3,390,705	+		Sama_2851	0.40	-1.5
3,390,706	-		Sama_2851	0.40	-0.5
3,390,706	-		Sama_2851	0.40	+1.5
3,390,706	-		Sama_2851	0.40	-0.1
3,390,706	-		Sama_2851	0.40	-0.4
3,390,706	-		Sama_2851	0.40	+2.1
3,390,825	+		Sama_2851	0.48	-1.7
3,390,825	+		Sama_2851	0.48	+0.5
3,390,826	-		Sama_2851	0.48	+0.5
3,390,828	+		Sama_2851	0.48	-0.4
3,390,828	+		Sama_2851	0.48	-2.0
3,390,828	+		Sama_2851	0.48	-0.3
3,390,828	+		Sama_2851	0.48	-0.6
3,390,828	+		Sama_2851	0.48	+1.1
3,390,828	+		Sama_2851	0.48	-0.1
3,390,828	+		Sama_2851	0.48	+0.1
3,390,828	+		Sama_2851	0.48	-1.7
3,390,828	+		Sama_2851	0.48	-1.1
3,390,829	-		Sama_2851	0.48	+0.3
3,390,829	-		Sama_2851	0.48	-1.3
3,390,829	-		Sama_2851	0.48	+0.5
3,390,829	-		Sama_2851	0.48	-2.1
3,390,829	-		Sama_2851	0.48	-0.2
3,390,829	-		Sama_2851	0.48	+0.5
3,390,829	-		Sama_2851	0.48	-0.6
3,390,829	-		Sama_2851	0.48	-0.1
3,390,829	-		Sama_2851	0.48	+0.9
3,390,839	-		Sama_2851	0.49	-1.9
3,390,912	-		Sama_2851	0.54	-2.4
3,390,989	+		Sama_2851	0.59	+0.9
3,391,047	-		Sama_2851	0.63	-0.4
3,391,047	-		Sama_2851	0.63	+0.3
3,391,170	+		Sama_2851	0.71	-1.5
3,391,170	+		Sama_2851	0.71	+0.0
3,391,170	+		Sama_2851	0.71	-0.6
3,391,170	+		Sama_2851	0.71	-0.5
3,391,170	+		Sama_2851	0.71	-1.9
3,391,170	+		Sama_2851	0.71	-1.3
3,391,171	-		Sama_2851	0.71	-0.3
3,391,171	-		Sama_2851	0.71	+1.5
3,391,171	-		Sama_2851	0.71	-0.5
3,391,171	-		Sama_2851	0.71	-0.4
3,391,171	-		Sama_2851	0.71	+0.8
3,391,171	-		Sama_2851	0.71	-0.1
3,391,171	-		Sama_2851	0.71	-0.2
3,391,172	+		Sama_2851	0.71	-0.2
3,391,172	+		Sama_2851	0.71	-0.4
3,391,172	+		Sama_2851	0.71	-0.9
3,391,172	+		Sama_2851	0.71	+1.5
3,391,172	+		Sama_2851	0.71	-0.3
3,391,172	+		Sama_2851	0.71	-0.4
3,391,172	+		Sama_2851	0.71	-0.4
3,391,172	+		Sama_2851	0.71	-1.1
3,391,172	+		Sama_2851	0.71	-0.2
3,391,172	+		Sama_2851	0.71	-0.5
3,391,172	+		Sama_2851	0.71	+1.4
3,391,172	+		Sama_2851	0.71	+0.9
3,391,172	+		Sama_2851	0.71	-0.9
3,391,173	-		Sama_2851	0.71	-0.9
3,391,173	-		Sama_2851	0.71	+0.4
3,391,173	-		Sama_2851	0.71	+0.5
3,391,173	-		Sama_2851	0.71	-0.5
3,391,173	-		Sama_2851	0.71	-1.0
3,391,173	-		Sama_2851	0.71	+0.0
3,391,173	-		Sama_2851	0.71	+0.7
3,391,173	-		Sama_2851	0.71	-1.2
3,391,173	-		Sama_2851	0.71	-0.5
3,391,173	-		Sama_2851	0.71	-0.5
3,391,174	+		Sama_2851	0.71	+1.5
3,391,174	+		Sama_2851	0.71	-0.2
3,391,174	+		Sama_2851	0.71	+0.3
3,391,174	+		Sama_2851	0.71	+0.3
3,391,174	+		Sama_2851	0.71	+0.9
3,391,174	+		Sama_2851	0.71	-0.5
3,391,174	+		Sama_2851	0.71	-0.9
3,391,174	+		Sama_2851	0.71	+0.3
3,391,174	+		Sama_2851	0.71	-1.1
3,391,174	+		Sama_2851	0.71	-0.6
3,391,175	-		Sama_2851	0.71	+0.3
3,391,175	-		Sama_2851	0.71	+0.7
3,391,175	-		Sama_2851	0.71	+0.0
3,391,175	-		Sama_2851	0.71	+0.8
3,391,175	-		Sama_2851	0.71	-0.4
3,391,175	-		Sama_2851	0.71	+0.5
3,391,175	-		Sama_2851	0.71	-0.8
3,391,216	+		Sama_2851	0.74	-0.2
3,391,217	-		Sama_2851	0.74	+0.0
3,391,217	-		Sama_2851	0.74	-0.5
3,391,217	-		Sama_2851	0.74	+1.1
3,391,238	+		Sama_2851	0.75	+0.7
3,391,239	-		Sama_2851	0.75	+0.3
3,391,247	+		Sama_2851	0.76	-1.2
3,391,275	+		Sama_2851	0.77	-0.4
3,391,275	+		Sama_2851	0.77	+1.9
3,391,275	+		Sama_2851	0.77	-1.0
3,391,275	+		Sama_2851	0.77	-0.8
3,391,275	+		Sama_2851	0.77	+0.1
3,391,275	+		Sama_2851	0.77	-0.0
3,391,275	+		Sama_2851	0.77	+0.2
3,391,276	-		Sama_2851	0.77	-0.4
3,391,288	+		Sama_2851	0.78	-0.8
3,391,288	+		Sama_2851	0.78	-0.9
3,391,288	+		Sama_2851	0.78	+2.5
3,391,289	-		Sama_2851	0.78	-0.1
3,391,306	+		Sama_2851	0.79	-1.7
3,391,306	+		Sama_2851	0.79	-0.2
3,391,307	-		Sama_2851	0.79	+1.2
3,391,307	-		Sama_2851	0.79	-1.3
3,391,307	-		Sama_2851	0.79	+0.0
3,391,307	-		Sama_2851	0.79	-1.1
3,391,326	+		Sama_2851	0.81	-0.4
3,391,327	-		Sama_2851	0.81	+0.0
3,391,327	-		Sama_2851	0.81	-0.3
3,391,345	-		Sama_2851	0.82	-1.2
3,391,345	-		Sama_2851	0.82	+1.0
3,391,345	-		Sama_2851	0.82	-0.7
3,391,345	-		Sama_2851	0.82	-0.2
3,391,353	+		Sama_2851	0.82	-0.7
3,391,353	+		Sama_2851	0.82	+0.1
3,391,353	+		Sama_2851	0.82	-0.1
3,391,353	+		Sama_2851	0.82	-0.2
3,391,353	+		Sama_2851	0.82	-0.5
3,391,353	+		Sama_2851	0.82	+0.1
3,391,353	+		Sama_2851	0.82	-0.6
3,391,353	+		Sama_2851	0.82	-1.0
3,391,353	+		Sama_2851	0.82	+1.2
3,391,353	+		Sama_2851	0.82	+0.7
3,391,353	+		Sama_2851	0.82	-1.3
3,391,353	+		Sama_2851	0.82	+0.8
3,391,353	+		Sama_2851	0.82	+0.1
3,391,353	+		Sama_2851	0.82	-1.1
3,391,353	+		Sama_2851	0.82	-0.3
3,391,353	+		Sama_2851	0.82	+0.3
3,391,354	-		Sama_2851	0.83	-0.2
3,391,354	-		Sama_2851	0.83	+0.6
3,391,354	-		Sama_2851	0.83	+0.5
3,391,354	-		Sama_2851	0.83	+0.2
3,391,354	-		Sama_2851	0.83	+0.4
3,391,354	-		Sama_2851	0.83	-0.9
3,391,354	-		Sama_2851	0.83	-1.0
3,391,424	+		Sama_2851	0.87	-0.5
3,391,500	+				-0.5
3,391,501	-				+1.7
3,391,501	-				+0.2
3,391,514	+				-0.1
3,391,514	+				-0.7
3,391,530	+				-0.5
3,391,530	+				+0.2
3,391,530	+				-0.6
3,391,530	+				+0.0
3,391,531	-				-1.3
3,391,566	+				-0.4
3,391,568	+				-0.1
3,391,574	+				+0.2
3,391,575	-				-0.2
3,391,578	+				-0.3
3,391,579	-				-0.9
3,391,596	-				+1.2
3,391,596	-				+0.1
3,391,596	-				-1.1
3,391,620	+				-0.3
3,391,635	+				+0.0
3,391,635	+				-0.3
3,391,646	+				+0.5
3,391,649	+				+1.0
3,391,693	+				-0.7
3,391,743	+				-0.2
3,391,743	+				+0.4
3,391,744	-				-2.3
3,391,791	-		Sama_2852	0.15	-1.4
3,391,886	+		Sama_2852	0.29	-1.3
3,391,886	+		Sama_2852	0.29	-0.6
3,391,886	+		Sama_2852	0.29	-1.3
3,391,887	-		Sama_2852	0.29	+1.2
3,391,913	-		Sama_2852	0.33	-1.3
3,391,913	-		Sama_2852	0.33	-0.7
3,391,913	-		Sama_2852	0.33	-1.4
3,391,965	+		Sama_2852	0.41	+0.0
3,391,999	+		Sama_2852	0.46	-1.3
3,391,999	+		Sama_2852	0.46	+0.7
3,391,999	+		Sama_2852	0.46	-0.2
3,392,000	-		Sama_2852	0.46	-0.6
3,392,000	-		Sama_2852	0.46	+0.0
3,392,058	-		Sama_2852	0.54	+1.2
3,392,064	+		Sama_2852	0.55	-1.5
3,392,064	+		Sama_2852	0.55	-1.7
3,392,064	+		Sama_2852	0.55	-0.2
3,392,064	+		Sama_2852	0.55	+0.2
3,392,065	-		Sama_2852	0.56	-2.2
3,392,065	-		Sama_2852	0.56	-0.8
3,392,065	-		Sama_2852	0.56	-0.6
3,392,065	-		Sama_2852	0.56	-1.1
3,392,065	-		Sama_2852	0.56	+0.4
3,392,081	+		Sama_2852	0.58	-2.8
3,392,083	+		Sama_2852	0.58	+0.3
3,392,083	+		Sama_2852	0.58	-0.9
3,392,083	+		Sama_2852	0.58	-0.3
3,392,083	+		Sama_2852	0.58	-0.8
3,392,084	-		Sama_2852	0.58	+1.2
3,392,084	-		Sama_2852	0.58	-1.8
3,392,084	-		Sama_2852	0.58	+1.9
3,392,084	-		Sama_2852	0.58	-1.3
3,392,103	-		Sama_2852	0.61	-0.8
3,392,103	-		Sama_2852	0.61	-0.2
3,392,104	+		Sama_2852	0.61	+0.4
3,392,104	+		Sama_2852	0.61	+0.8
3,392,104	+		Sama_2852	0.61	+0.1
3,392,104	+		Sama_2852	0.61	+0.7
3,392,104	+		Sama_2852	0.61	+1.7
3,392,104	+		Sama_2852	0.61	-1.5
3,392,104	+		Sama_2852	0.61	-0.5
3,392,104	+		Sama_2852	0.61	-1.2
3,392,104	+		Sama_2852	0.61	-0.9
3,392,104	+		Sama_2852	0.61	-0.3
3,392,104	+		Sama_2852	0.61	+1.9
3,392,104	+		Sama_2852	0.61	+0.7
3,392,104	+		Sama_2852	0.61	+0.6
3,392,105	-		Sama_2852	0.61	-1.1
3,392,105	-		Sama_2852	0.61	-0.4
3,392,105	-		Sama_2852	0.61	+0.1
3,392,105	-		Sama_2852	0.61	-0.7
3,392,105	-		Sama_2852	0.61	-0.2
3,392,105	-		Sama_2852	0.61	+0.6
3,392,105	-		Sama_2852	0.61	-1.5
3,392,174	+		Sama_2852	0.72	-0.2
3,392,376	+				+0.0
3,392,376	+				+0.2
3,392,413	+				-0.4
3,392,413	+				-0.2
3,392,414	-				+0.3
3,392,456	+				+0.0
3,392,456	+				-0.6
3,392,456	+				-0.7
3,392,457	-				-0.1
3,392,457	-				-0.2
3,392,457	-				+0.6
3,392,457	-				+0.0
3,392,469	+				+0.3
3,392,469	+				+0.1
3,392,483	-				-2.0
3,392,574	+		Sama_2853	0.17	-0.9
3,392,574	+		Sama_2853	0.17	+0.2
3,392,575	-		Sama_2853	0.17	-1.3
3,392,575	-		Sama_2853	0.17	+0.8
3,392,578	-		Sama_2853	0.18	-0.1
3,392,779	+		Sama_2853	0.65	-0.3
3,392,779	+		Sama_2853	0.65	-1.3
3,392,780	-		Sama_2853	0.65	-0.3
3,392,780	-		Sama_2853	0.65	-2.8
3,392,836	+		Sama_2853	0.78	-1.2
3,392,836	+		Sama_2853	0.78	-1.1
3,392,843	+		Sama_2853	0.79	-1.9
3,392,843	+		Sama_2853	0.79	+0.3
3,392,843	+		Sama_2853	0.79	-0.4
3,392,843	+		Sama_2853	0.79	-0.4
3,392,844	-		Sama_2853	0.80	-0.9
3,392,844	-		Sama_2853	0.80	-0.4
3,392,867	+		Sama_2853	0.85	+0.6
3,392,867	+		Sama_2853	0.85	+0.2
3,392,867	+		Sama_2853	0.85	+0.2
3,392,867	+		Sama_2853	0.85	-0.6
3,392,867	+		Sama_2853	0.85	-0.9
3,392,868	-		Sama_2853	0.85	+0.4
3,392,868	-		Sama_2853	0.85	-0.2
3,392,895	+				+0.4
3,392,895	+				-1.4
3,392,914	+				-1.1
3,392,914	+				+2.2
3,392,915	-				+0.1
3,392,915	-				+0.9
3,392,925	+				+1.2
3,392,926	-				+0.3
3,392,931	+				+0.7
3,392,931	+				+0.9
3,392,931	+				+0.9
3,392,932	-				+0.5
3,392,932	-				-0.2
3,392,932	-				-0.7
3,392,932	-				+0.4
3,392,935	+				-0.7
3,392,935	+				+0.3
3,392,935	+				+1.2
3,392,935	+				+0.4
3,392,936	-				-1.6
3,392,936	-				-1.4
3,392,936	-				-1.1
3,392,936	-				+0.2
3,392,936	-				-0.7
3,392,948	-				-0.2
3,392,958	-				-1.8
3,392,966	+				+0.7
3,393,042	-		Sama_2854	0.16	+0.3
3,393,197	+		Sama_2854	0.57	+0.3
3,393,198	-		Sama_2854	0.57	+0.7
3,393,199	+		Sama_2854	0.57	-1.4
3,393,199	+		Sama_2854	0.57	-0.8
3,393,199	+		Sama_2854	0.57	-0.6
3,393,199	+		Sama_2854	0.57	-0.1
3,393,199	+		Sama_2854	0.57	-1.0
3,393,199	+		Sama_2854	0.57	+0.3
3,393,199	+		Sama_2854	0.57	-1.3
3,393,199	+		Sama_2854	0.57	+0.4
3,393,200	-		Sama_2854	0.58	-2.0
3,393,200	-		Sama_2854	0.58	+0.8
3,393,200	-		Sama_2854	0.58	-1.4
3,393,200	-		Sama_2854	0.58	-0.2
3,393,200	-		Sama_2854	0.58	+1.5
3,393,200	-		Sama_2854	0.58	-2.8
3,393,200	-		Sama_2854	0.58	-2.1
3,393,259	+		Sama_2854	0.73	+0.3
3,393,259	+		Sama_2854	0.73	-0.5
3,393,260	-		Sama_2854	0.73	-1.2
3,393,260	-		Sama_2854	0.73	-0.2
3,393,260	-		Sama_2854	0.73	-2.4
3,393,333	+				-1.3
3,393,334	-				-0.2
3,393,339	+				+0.7
3,393,339	+				-0.1
3,393,339	+				-0.6
3,393,339	+				-2.0
3,393,340	-				-0.1
3,393,340	-				+1.5
3,393,355	-				+0.0