Strain Fitness in Shewanella amazonensis SB2B around Sama_2177

Experiment: Cobalt chloride 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cobalt chloride 0.078125 mM
2,632,288	+				+1.5
2,632,288	+				+1.8
2,632,371	+		Sama_2176	0.16	+3.2
2,632,439	+		Sama_2176	0.26	+0.9
2,632,439	+		Sama_2176	0.26	-0.9
2,632,597	+		Sama_2176	0.48	+0.6
2,632,606	+		Sama_2176	0.49	+1.0
2,632,606	+		Sama_2176	0.49	+1.2
2,632,634	+		Sama_2176	0.53	+2.2
2,632,634	+		Sama_2176	0.53	+2.0
2,632,634	+		Sama_2176	0.53	+2.6
2,632,729	+		Sama_2176	0.67	+1.3
2,632,856	-		Sama_2176	0.85	-0.5
2,632,864	-		Sama_2176	0.86	+0.8
2,632,888	+		Sama_2176	0.89	+0.8
2,632,888	+		Sama_2176	0.89	+1.3
2,632,888	+		Sama_2176	0.89	+1.8
2,632,957	-				+0.1
2,632,960	+				-1.9
2,632,960	+				+0.9
2,632,960	+				-0.9
2,632,960	+				-0.9
2,632,960	+				-0.2
2,632,960	+				+0.2
2,632,961	-				-1.2
2,632,961	-				+0.3
2,633,041	-				+0.7
2,633,061	+				+0.8
2,633,062	-				-0.3
2,633,062	-				+1.8
2,633,082	-				-0.8
2,633,082	-				-1.0
2,633,136	+				-0.0
2,633,137	-				-1.2
2,633,137	-				+2.7
2,633,185	-				+0.2
2,633,220	+				-2.2
2,633,220	+				+0.7
2,633,221	-				+0.0
2,633,221	-				-2.3
2,633,242	+				+1.0
2,633,242	+				+0.8
2,633,243	-				+0.1
2,633,243	-				-1.2
2,633,243	-				-1.3
2,633,246	+				-0.2
2,633,246	+				+0.0
2,633,246	+				-0.6
2,633,246	+				+0.4
2,633,246	+				+2.4
2,633,246	+				-0.4
2,633,246	+				+0.3
2,633,246	+				-0.6
2,633,246	+				+0.5
2,633,246	+				-0.3
2,633,246	+				-0.8
2,633,246	+				-0.1
2,633,246	+				-0.5
2,633,246	+				-0.8
2,633,246	+				-0.2
2,633,247	-				+2.2
2,633,247	-				-0.7
2,633,247	-				-2.1
2,633,247	-				+0.2
2,633,247	-				+0.8
2,633,247	-				-0.6
2,633,247	-				-0.7
2,633,247	-				-0.1
2,633,247	-				-0.7
2,633,247	-				-1.0
2,633,247	-				+0.0
2,633,247	-				-0.7
2,633,252	+				+0.3
2,633,252	+				-0.4
2,633,252	+				+0.0
2,633,253	-				-0.3
2,633,258	-				+1.2
2,633,274	+				+0.8
2,633,275	-				-0.7
2,633,275	-				-1.9
2,633,310	+				+0.6
2,633,311	-				+0.7
2,633,337	+				-1.1
2,633,337	+				-1.2
2,633,337	+				-0.5
2,633,338	-				-1.0
2,633,338	-				-0.5
2,633,338	-				+0.1
2,633,399	+		Sama_2177	0.11	+0.5
2,633,399	+		Sama_2177	0.11	+0.6
2,633,400	-		Sama_2177	0.11	+0.9
2,633,400	-		Sama_2177	0.11	+0.4
2,633,440	-		Sama_2177	0.14	+0.8
2,633,528	+		Sama_2177	0.20	+1.9
2,633,528	+		Sama_2177	0.20	+1.2
2,633,529	-		Sama_2177	0.20	+0.4
2,633,529	-		Sama_2177	0.20	-0.5
2,633,529	-		Sama_2177	0.20	+1.3
2,633,530	+		Sama_2177	0.20	-0.7
2,633,532	+		Sama_2177	0.20	-0.4
2,633,532	+		Sama_2177	0.20	+0.8
2,633,532	+		Sama_2177	0.20	+0.4
2,633,533	-		Sama_2177	0.21	-1.2
2,633,533	-		Sama_2177	0.21	-0.2
2,633,594	+		Sama_2177	0.25	+0.2
2,633,632	+		Sama_2177	0.27	-0.1
2,633,632	+		Sama_2177	0.27	-0.3
2,633,652	+		Sama_2177	0.29	-0.7
2,633,653	-		Sama_2177	0.29	+0.3
2,633,653	-		Sama_2177	0.29	+0.4
2,633,653	-		Sama_2177	0.29	+0.3
2,633,653	-		Sama_2177	0.29	-0.8
2,633,698	+		Sama_2177	0.32	-0.4
2,633,699	-		Sama_2177	0.32	+0.5
2,633,699	-		Sama_2177	0.32	+0.8
2,633,712	+		Sama_2177	0.33	-0.8
2,633,731	+		Sama_2177	0.34	-1.0
2,633,731	+		Sama_2177	0.34	+0.4
2,633,731	+		Sama_2177	0.34	-0.1
2,633,731	+		Sama_2177	0.34	-0.7
2,633,731	+		Sama_2177	0.34	-0.3
2,633,742	-		Sama_2177	0.35	-1.6
2,633,782	+		Sama_2177	0.38	+0.8
2,633,782	+		Sama_2177	0.38	-0.3
2,633,999	+		Sama_2177	0.53	+1.2
2,633,999	+		Sama_2177	0.53	+0.8
2,634,000	-		Sama_2177	0.53	-1.2
2,634,061	+		Sama_2177	0.57	-0.4
2,634,061	+		Sama_2177	0.57	+0.1
2,634,062	-		Sama_2177	0.57	-0.4
2,634,062	-		Sama_2177	0.57	+1.4
2,634,062	-		Sama_2177	0.57	-1.2
2,634,062	-		Sama_2177	0.57	+0.3
2,634,062	-		Sama_2177	0.57	+0.5
2,634,062	-		Sama_2177	0.57	+0.2
2,634,062	-		Sama_2177	0.57	-0.5
2,634,149	+		Sama_2177	0.63	-1.1
2,634,149	+		Sama_2177	0.63	-1.5
2,634,221	+		Sama_2177	0.68	-0.2
2,634,221	+		Sama_2177	0.68	-1.2
2,634,279	+		Sama_2177	0.72	-0.9
2,634,279	+		Sama_2177	0.72	+0.4
2,634,279	+		Sama_2177	0.72	-1.0
2,634,280	-		Sama_2177	0.72	-1.4
2,634,317	-		Sama_2177	0.75	+0.8
2,634,317	-		Sama_2177	0.75	-1.2
2,634,317	-		Sama_2177	0.75	-1.2
2,634,354	-		Sama_2177	0.77	-1.6
2,634,411	+		Sama_2177	0.81	-0.2
2,634,411	+		Sama_2177	0.81	+0.8
2,634,412	-		Sama_2177	0.81	-1.7
2,634,412	-		Sama_2177	0.81	-0.7
2,634,412	-		Sama_2177	0.81	+0.5
2,634,412	-		Sama_2177	0.81	+0.5
2,634,412	-		Sama_2177	0.81	-0.4
2,634,412	-		Sama_2177	0.81	+2.6
2,634,412	-		Sama_2177	0.81	+1.8
2,634,477	+		Sama_2177	0.86	-0.7
2,634,504	-		Sama_2177	0.88	-1.3
2,634,574	+				+0.8
2,634,718	-				+0.8
2,634,725	+				+0.5
2,634,846	+				-0.3
2,634,946	+				-1.1
2,634,947	-				-1.1
2,634,954	+				-0.2
2,634,960	+				-0.8
2,635,037	+				+0.5
2,635,037	+				+0.5
2,635,037	+				-2.4
2,635,038	-				-1.3
2,635,247	+		Sama_2178	0.18	-1.1
2,635,247	+		Sama_2178	0.18	-1.5
2,635,247	+		Sama_2178	0.18	-1.1
2,635,248	-		Sama_2178	0.18	-0.0
2,635,248	-		Sama_2178	0.18	-0.9
2,635,269	+		Sama_2178	0.20	+0.2
2,635,269	+		Sama_2178	0.20	-1.7
2,635,282	+		Sama_2178	0.21	+0.6
2,635,297	+		Sama_2178	0.22	-0.3
2,635,333	+		Sama_2178	0.24	-1.6
2,635,352	+		Sama_2178	0.26	-0.0
2,635,352	+		Sama_2178	0.26	+0.5
2,635,355	+		Sama_2178	0.26	-0.2
2,635,355	+		Sama_2178	0.26	+1.6
2,635,356	-		Sama_2178	0.26	-1.7
2,635,356	-		Sama_2178	0.26	-1.6
2,635,356	-		Sama_2178	0.26	+0.4
2,635,375	+		Sama_2178	0.28	-1.7
2,635,392	+		Sama_2178	0.29	-1.5
2,635,392	+		Sama_2178	0.29	-0.0
2,635,471	+		Sama_2178	0.35	-1.0
2,635,501	+		Sama_2178	0.37	-0.7
2,635,501	+		Sama_2178	0.37	-1.8
2,635,513	+		Sama_2178	0.38	+0.7
2,635,551	+		Sama_2178	0.41	-0.0
2,635,551	+		Sama_2178	0.41	-0.4
2,635,592	+		Sama_2178	0.44	+1.3
2,635,592	+		Sama_2178	0.44	-0.4
2,635,615	+		Sama_2178	0.46	-1.9
2,635,659	+		Sama_2178	0.49	+0.5