Strain Fitness in Shewanella amazonensis SB2B around Sama_2111

Experiment: Cobalt chloride 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cobalt chloride 0.078125 mM
2,552,180	+		Sama_2108	0.90	+0.9
2,552,222	-				+0.1
2,552,277	+				-0.1
2,552,277	+				+0.2
2,552,277	+				-0.5
2,552,278	-				-1.3
2,552,278	-				+0.0
2,552,283	+				-2.1
2,552,324	-				+0.1
2,552,355	+		Sama_2109	0.14	+0.2
2,552,356	-		Sama_2109	0.14	+0.6
2,552,423	+		Sama_2109	0.28	+0.3
2,552,423	+		Sama_2109	0.28	-0.5
2,552,424	-		Sama_2109	0.28	+0.0
2,552,424	-		Sama_2109	0.28	-0.6
2,552,424	-		Sama_2109	0.28	-2.4
2,552,485	+		Sama_2109	0.41	-0.3
2,552,486	-		Sama_2109	0.41	+0.0
2,552,486	-		Sama_2109	0.41	+0.7
2,552,486	-		Sama_2109	0.41	-1.3
2,552,489	+		Sama_2109	0.42	-0.8
2,552,489	+		Sama_2109	0.42	+0.2
2,552,489	+		Sama_2109	0.42	+1.1
2,552,490	-		Sama_2109	0.42	+0.7
2,552,490	-		Sama_2109	0.42	+0.0
2,552,490	-		Sama_2109	0.42	+1.6
2,552,515	-		Sama_2109	0.47	-0.5
2,552,523	+		Sama_2109	0.49	-0.6
2,552,523	+		Sama_2109	0.49	+0.9
2,552,523	+		Sama_2109	0.49	-0.8
2,552,587	-		Sama_2109	0.62	-1.3
2,552,665	-		Sama_2109	0.79	-0.1
2,552,665	-		Sama_2109	0.79	-1.9
2,552,765	+				-0.9
2,552,765	+				-0.5
2,552,765	+				-1.1
2,552,776	-				-1.1
2,552,807	+				+1.2
2,552,807	+				-0.1
2,552,808	-				+1.4
2,552,836	+				+0.2
2,552,836	+				-0.7
2,552,936	+		Sama_2110	0.45	-0.9
2,552,936	+		Sama_2110	0.45	-0.8
2,552,936	+		Sama_2110	0.45	-0.3
2,552,936	+		Sama_2110	0.45	-0.9
2,552,936	+		Sama_2110	0.45	-2.0
2,552,936	+		Sama_2110	0.45	-0.1
2,552,936	+		Sama_2110	0.45	+0.6
2,552,936	+		Sama_2110	0.45	-0.5
2,552,936	+		Sama_2110	0.45	+0.0
2,552,936	+		Sama_2110	0.45	+0.3
2,552,936	+		Sama_2110	0.45	-0.7
2,552,937	-		Sama_2110	0.46	-0.7
2,552,937	-		Sama_2110	0.46	-2.3
2,552,937	-		Sama_2110	0.46	-0.7
2,552,937	-		Sama_2110	0.46	+1.4
2,552,998	+		Sama_2110	0.74	-1.9
2,552,999	-		Sama_2110	0.74	+0.9
2,553,004	+		Sama_2110	0.76	+0.5
2,553,004	+		Sama_2110	0.76	+0.2
2,553,005	-		Sama_2110	0.77	-0.1
2,553,084	+				+0.0
2,553,085	-				+0.9
2,553,085	-				+0.4
2,553,091	+				-0.1
2,553,106	+				-0.7
2,553,106	+				+1.1
2,553,106	+				+0.3
2,553,107	-				+0.4
2,553,123	+				-0.8
2,553,161	+				+0.2
2,553,161	+				+0.2
2,553,161	+				+1.2
2,553,178	+				+0.6
2,553,265	-				+1.2
2,553,372	-		Sama_2111	0.13	-1.1
2,553,412	+		Sama_2111	0.15	+1.0
2,553,412	+		Sama_2111	0.15	+0.7
2,553,412	+		Sama_2111	0.15	-0.3
2,553,413	-		Sama_2111	0.15	-0.4
2,553,413	-		Sama_2111	0.15	-1.1
2,553,469	+		Sama_2111	0.19	+3.2
2,553,469	+		Sama_2111	0.19	-0.1
2,553,469	+		Sama_2111	0.19	+0.6
2,553,470	-		Sama_2111	0.19	-1.6
2,553,470	-		Sama_2111	0.19	+0.7
2,553,472	-		Sama_2111	0.19	-0.5
2,553,482	-		Sama_2111	0.20	-1.0
2,553,492	+		Sama_2111	0.21	-0.7
2,553,492	+		Sama_2111	0.21	-0.4
2,553,492	+		Sama_2111	0.21	+1.2
2,553,537	-		Sama_2111	0.24	+1.6
2,553,537	-		Sama_2111	0.24	-1.9
2,553,550	+		Sama_2111	0.24	-0.5
2,553,550	+		Sama_2111	0.24	+0.4
2,553,551	-		Sama_2111	0.24	+1.4
2,553,551	-		Sama_2111	0.24	-1.0
2,553,551	-		Sama_2111	0.24	-0.4
2,553,560	+		Sama_2111	0.25	-1.6
2,553,629	-		Sama_2111	0.30	-1.0
2,553,688	-		Sama_2111	0.33	-0.2
2,553,733	+		Sama_2111	0.36	-0.4
2,553,733	+		Sama_2111	0.36	+0.6
2,553,733	+		Sama_2111	0.36	-0.1
2,553,734	-		Sama_2111	0.36	-0.1
2,553,734	-		Sama_2111	0.36	-0.8
2,553,740	+		Sama_2111	0.37	+1.2
2,553,740	+		Sama_2111	0.37	-2.1
2,553,740	+		Sama_2111	0.37	+0.4
2,553,822	+		Sama_2111	0.42	+0.2
2,553,822	+		Sama_2111	0.42	+0.4
2,553,822	+		Sama_2111	0.42	-1.2
2,553,823	-		Sama_2111	0.42	+0.2
2,553,843	+		Sama_2111	0.44	-0.9
2,553,844	-		Sama_2111	0.44	-1.3
2,553,844	-		Sama_2111	0.44	+0.0
2,553,844	-		Sama_2111	0.44	-0.7
2,553,866	+		Sama_2111	0.45	+0.3
2,553,867	-		Sama_2111	0.45	-0.1
2,553,898	+		Sama_2111	0.47	+1.0
2,553,898	+		Sama_2111	0.47	+0.4
2,553,899	-		Sama_2111	0.47	-1.1
2,553,899	-		Sama_2111	0.47	+0.8
2,553,933	-		Sama_2111	0.50	+0.0
2,553,933	-		Sama_2111	0.50	-0.3
2,554,035	-		Sama_2111	0.56	-1.9
2,554,090	-		Sama_2111	0.60	-0.7
2,554,286	+		Sama_2111	0.73	-0.4
2,554,287	-		Sama_2111	0.73	-0.2
2,554,287	-		Sama_2111	0.73	-0.2
2,554,287	-		Sama_2111	0.73	-1.1
2,554,287	-		Sama_2111	0.73	+1.6
2,554,288	+		Sama_2111	0.73	+0.5
2,554,288	+		Sama_2111	0.73	+0.2
2,554,289	-		Sama_2111	0.73	-0.9
2,554,289	-		Sama_2111	0.73	+0.0
2,554,294	+		Sama_2111	0.73	-1.3
2,554,294	+		Sama_2111	0.73	-1.5
2,554,294	+		Sama_2111	0.73	+0.1
2,554,295	-		Sama_2111	0.73	-0.7
2,554,355	+		Sama_2111	0.77	+0.9
2,554,487	+		Sama_2111	0.86	+0.1
2,554,487	+		Sama_2111	0.86	-1.4
2,554,488	-		Sama_2111	0.86	-1.1
2,554,488	-		Sama_2111	0.86	-0.1
2,554,488	-		Sama_2111	0.86	-0.9
2,554,488	-		Sama_2111	0.86	+0.9
2,554,488	-		Sama_2111	0.86	-0.5
2,554,491	+		Sama_2111	0.86	-1.4
2,554,491	+		Sama_2111	0.86	+0.4
2,554,529	+		Sama_2111	0.89	-1.6
2,554,572	+				-0.8
2,554,589	+				-0.7
2,554,589	+				+0.3
2,554,590	-				-2.5
2,554,590	-				-1.5
2,554,654	-				+0.4
2,554,654	-				+0.0
2,554,654	-				+1.2
2,554,654	-				+0.9
2,554,654	-				-0.4
2,554,654	-				-2.3
2,554,686	-				-0.3
2,554,698	+				-0.6
2,554,698	+				+0.0
2,554,741	+				+0.4
2,554,741	+				-2.1
2,554,742	-				+0.6
2,554,742	-				-0.6
2,554,742	-				+0.6
2,554,742	-				+0.6
2,554,787	-				-0.4
2,554,787	-				-0.8
2,554,787	-				+0.4
2,554,787	-				-0.4
2,554,844	+		Sama_2112	0.15	+0.4
2,554,845	-		Sama_2112	0.15	-0.7
2,554,845	-		Sama_2112	0.15	+1.2
2,554,873	-		Sama_2112	0.18	+0.2
2,554,877	+		Sama_2112	0.19	-0.9
2,554,877	+		Sama_2112	0.19	-2.2
2,554,878	-		Sama_2112	0.19	-0.1
2,554,899	-		Sama_2112	0.21	-1.0
2,554,927	+		Sama_2112	0.25	-0.4
2,554,927	+		Sama_2112	0.25	-0.1
2,554,927	+		Sama_2112	0.25	-1.2
2,554,928	-		Sama_2112	0.25	+0.6
2,554,930	+		Sama_2112	0.25	-0.8
2,554,931	-		Sama_2112	0.25	-0.1
2,554,938	+		Sama_2112	0.26	+0.9
2,554,951	+		Sama_2112	0.27	+1.0
2,554,952	-		Sama_2112	0.27	+0.0
2,554,952	-		Sama_2112	0.27	+0.0
2,554,961	+		Sama_2112	0.28	+0.6
2,554,961	+		Sama_2112	0.28	-0.5
2,554,962	-		Sama_2112	0.28	+0.9
2,554,971	+		Sama_2112	0.30	+0.2
2,554,971	+		Sama_2112	0.30	-0.8
2,554,971	+		Sama_2112	0.30	+0.0
2,554,972	-		Sama_2112	0.30	-1.1
2,554,972	-		Sama_2112	0.30	+1.2
2,554,972	-		Sama_2112	0.30	+0.0
2,555,020	+		Sama_2112	0.35	-0.5
2,555,021	-		Sama_2112	0.35	-0.6
2,555,021	-		Sama_2112	0.35	-0.8
2,555,022	+		Sama_2112	0.35	+0.0
2,555,022	+		Sama_2112	0.35	-0.5
2,555,022	+		Sama_2112	0.35	-0.7
2,555,022	+		Sama_2112	0.35	-0.1
2,555,022	+		Sama_2112	0.35	-1.4
2,555,022	+		Sama_2112	0.35	+0.4
2,555,022	+		Sama_2112	0.35	-0.6
2,555,022	+		Sama_2112	0.35	+0.9
2,555,022	+		Sama_2112	0.35	-0.7
2,555,023	-		Sama_2112	0.35	-1.5
2,555,023	-		Sama_2112	0.35	+1.2
2,555,023	-		Sama_2112	0.35	+0.4
2,555,023	-		Sama_2112	0.35	-1.3
2,555,084	-		Sama_2112	0.42	-0.1
2,555,134	-		Sama_2112	0.48	-1.1
2,555,160	-		Sama_2112	0.51	-2.5
2,555,226	+		Sama_2112	0.58	-1.2
2,555,256	-		Sama_2112	0.62	-0.6
2,555,277	+		Sama_2112	0.64	-0.6
2,555,278	-		Sama_2112	0.64	+0.7
2,555,278	-		Sama_2112	0.64	-0.1
2,555,301	+		Sama_2112	0.67	-0.6
2,555,302	-		Sama_2112	0.67	+0.5
2,555,302	-		Sama_2112	0.67	-0.3
2,555,302	-		Sama_2112	0.67	-1.5
2,555,362	+		Sama_2112	0.74	+1.0
2,555,362	+		Sama_2112	0.74	-0.3
2,555,362	+		Sama_2112	0.74	-1.8
2,555,362	+		Sama_2112	0.74	+0.4
2,555,362	+		Sama_2112	0.74	-1.1
2,555,363	-		Sama_2112	0.74	-1.3
2,555,363	-		Sama_2112	0.74	+1.0
2,555,363	-		Sama_2112	0.74	-0.9
2,555,363	-		Sama_2112	0.74	+1.8
2,555,363	-		Sama_2112	0.74	+0.9
2,555,363	-		Sama_2112	0.74	+0.7
2,555,473	+		Sama_2112	0.86	+0.1
2,555,474	-		Sama_2112	0.86	+1.0
2,555,474	-		Sama_2112	0.86	+0.3
2,555,657	+				-0.1
2,555,658	-				-0.1
2,555,685	+				-0.0
2,555,686	-				+0.2
2,555,686	-				-0.2
2,555,690	+				-0.8
2,555,690	+				-2.2
2,555,690	+				-0.3