Strain Fitness in Shewanella amazonensis SB2B around Sama_1981

Experiment: Cobalt chloride 0.078125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_1979 and Sama_1980 are separated by 158 nucleotidesSama_1980 and Sama_1981 are separated by 11 nucleotidesSama_1981 and Sama_1982 are separated by 57 nucleotides Sama_1979: Sama_1979 - acyl carrier protein (RefSeq), at 2,408,197 to 2,408,430 _1979 Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335 _1980 Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273 _1981 Sama_1982: Sama_1982 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,410,331 to 2,411,290 _1982 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -1 0 1 2at 2408.524 kb on - strandat 2408.543 kb on - strandat 2408.552 kb on + strandat 2408.552 kb on + strandat 2408.553 kb on - strandat 2409.349 kb on - strandat 2409.375 kb on - strandat 2409.375 kb on - strandat 2410.496 kb on - strand, within Sama_1982at 2410.496 kb on - strand, within Sama_1982at 2410.535 kb on - strand, within Sama_1982at 2410.537 kb on + strand, within Sama_1982at 2410.753 kb on - strand, within Sama_1982

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.078125 mM
remove
2,408,524 - +0.6
2,408,543 - -0.3
2,408,552 + +0.5
2,408,552 + -0.8
2,408,553 - +0.1
2,409,349 - -0.6
2,409,375 - -0.4
2,409,375 - -0.5
2,410,496 - Sama_1982 0.17 +2.2
2,410,496 - Sama_1982 0.17 +0.8
2,410,535 - Sama_1982 0.21 +0.5
2,410,537 + Sama_1982 0.21 -0.6
2,410,753 - Sama_1982 0.44 +1.3

Or see this region's nucleotide sequence