Strain Fitness in Shewanella amazonensis SB2B around Sama_0524

Experiment: Cobalt chloride 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cobalt chloride 0.078125 mM
646,654	+		Sama_0523	0.78	+0.6
646,654	+		Sama_0523	0.78	-0.9
646,654	+		Sama_0523	0.78	+0.4
646,654	+		Sama_0523	0.78	-1.2
646,654	+		Sama_0523	0.78	+0.2
646,654	+		Sama_0523	0.78	+1.3
646,654	+		Sama_0523	0.78	+0.3
646,654	+		Sama_0523	0.78	-0.2
646,654	+		Sama_0523	0.78	-0.2
646,655	-		Sama_0523	0.78	-0.5
646,655	-		Sama_0523	0.78	-0.7
646,655	-		Sama_0523	0.78	-1.7
646,655	-		Sama_0523	0.78	+0.3
646,655	-		Sama_0523	0.78	+0.8
646,696	+		Sama_0523	0.79	-2.4
646,697	-		Sama_0523	0.79	+0.1
646,716	-		Sama_0523	0.79	+0.3
646,716	-		Sama_0523	0.79	-0.5
646,769	+		Sama_0523	0.81	-0.7
646,771	+		Sama_0523	0.81	+0.1
646,771	+		Sama_0523	0.81	+0.9
646,771	+		Sama_0523	0.81	+0.9
646,771	+		Sama_0523	0.81	+1.7
646,872	+		Sama_0523	0.84	+0.2
646,919	+		Sama_0523	0.85	-0.5
646,938	+		Sama_0523	0.86	-0.9
647,008	+		Sama_0523	0.88	-0.4
647,008	+		Sama_0523	0.88	+2.2
647,008	+		Sama_0523	0.88	+0.3
647,008	+		Sama_0523	0.88	-0.8
647,009	-		Sama_0523	0.88	-1.2
647,009	-		Sama_0523	0.88	-0.5
647,009	-		Sama_0523	0.88	+0.4
647,009	-		Sama_0523	0.88	-0.5
647,121	+				-0.7
647,121	+				-1.7
647,122	-				-0.7
647,122	-				+1.2
647,122	-				-0.4
647,122	-				+0.5
647,122	-				+0.1
647,144	+				-0.5
647,144	+				-1.9
647,144	+				+0.2
647,145	-				+0.2
647,180	+				-1.1
647,180	+				+0.5
647,182	+				-1.0
647,182	+				+0.1
647,182	+				+0.7
647,182	+				-0.9
647,182	+				+0.9
647,182	+				+0.0
647,183	-				+0.1
647,183	-				-1.2
647,183	-				-1.2
647,183	-				-1.3
647,186	+				-0.6
647,186	+				+0.3
647,186	+				+1.1
647,187	-				+0.1
647,187	-				+0.1
647,187	-				-0.7
647,187	-				+0.3
647,233	+				-1.2
647,234	-				-0.0
647,249	+				-1.1
647,250	-				+0.4
647,275	+				-1.3
647,276	-				-0.6
647,276	-				+0.5
647,276	-				-0.5
647,336	+				-1.1
647,354	-				-1.8
647,366	+				+0.3
647,367	-				+0.3
647,367	-				+1.2
647,384	+				+0.1
647,384	+				+0.7
647,384	+				+0.5
647,384	+				+0.3
647,384	+				+0.3
647,385	-				+1.1
647,385	-				-1.2
647,411	+				-0.9
647,411	+				+0.7
647,412	-				-0.1
647,447	+				-0.7
647,495	+				-0.8
647,500	+				-2.0
647,500	+				+1.8
647,500	+				+0.9
647,500	+				-0.2
647,500	+				+0.3
647,500	+				-0.9
647,501	-				+0.7
647,501	-				-0.2
647,501	-				-0.5
647,501	-				-0.5
647,501	-				-0.9
647,501	-				-1.0
647,501	-				-1.0
647,504	-				-1.1
647,504	-				+0.3
647,504	-				+0.9
647,504	-				-0.9
647,528	+				-0.5
647,533	+				+1.1
647,534	-				-0.6
647,534	-				+0.1
647,544	-				+0.0
647,567	+				-0.4
647,567	+				-0.5
647,567	+				-0.3
647,567	+				+0.9
647,568	-				+0.3
647,588	+				-0.3
647,588	+				-1.3
647,589	-				-0.2
647,592	+				-0.2
647,592	+				-1.2
647,592	+				-0.6
647,593	-				-0.0
647,593	-				-0.1
647,593	-				+0.0
647,616	-				+1.1
647,622	+				-0.6
647,622	+				+0.3
647,622	+				+0.3
647,622	+				-1.1
647,622	+				-0.4
647,622	+				+0.3
647,622	+				-0.7
647,622	+				-1.0
647,623	-				-0.1
647,623	-				+0.8
647,623	-				-0.0
647,626	+				+0.9
647,626	+				-0.9
647,627	-				-1.1
647,627	-				-2.0
647,627	-				+0.8
647,627	-				+1.7
647,627	-				+1.7
647,627	-				-1.2
647,627	-				-0.1
647,629	+				-1.2
647,629	+				-1.0
647,630	-				+0.7
647,674	+				-0.7
647,675	-				+0.4
647,675	-				+0.1
647,690	+				+0.5
647,769	+		Sama_0524	0.17	-1.7
647,769	+		Sama_0524	0.17	-0.1
647,770	-		Sama_0524	0.17	-0.6
647,770	-		Sama_0524	0.17	+0.9
647,796	+		Sama_0524	0.19	+0.6
647,797	-		Sama_0524	0.19	-0.8
647,824	+		Sama_0524	0.21	-0.3
647,824	+		Sama_0524	0.21	+0.6
647,824	+		Sama_0524	0.21	-0.4
647,825	-		Sama_0524	0.22	-0.8
647,825	-		Sama_0524	0.22	+0.1
647,836	+		Sama_0524	0.22	+0.1
647,837	-		Sama_0524	0.23	-1.4
647,837	-		Sama_0524	0.23	-0.1
647,837	-		Sama_0524	0.23	+1.9
647,847	+		Sama_0524	0.23	-0.7
647,847	+		Sama_0524	0.23	-0.1
647,848	-		Sama_0524	0.23	-1.1
647,859	+		Sama_0524	0.24	+0.1
647,859	+		Sama_0524	0.24	-0.2
647,859	+		Sama_0524	0.24	+0.3
647,859	+		Sama_0524	0.24	-0.3
647,859	+		Sama_0524	0.24	-1.7
647,859	+		Sama_0524	0.24	-0.7
647,860	-		Sama_0524	0.25	-1.4
647,860	-		Sama_0524	0.25	-1.4
647,860	-		Sama_0524	0.25	-0.3
647,860	-		Sama_0524	0.25	+0.1
647,860	-		Sama_0524	0.25	-0.5
647,860	-		Sama_0524	0.25	-0.4
647,860	-		Sama_0524	0.25	-1.1
647,860	-		Sama_0524	0.25	+0.1
647,888	+		Sama_0524	0.27	-1.0
647,889	-		Sama_0524	0.27	-1.8
647,909	+		Sama_0524	0.29	-1.9
647,910	-		Sama_0524	0.29	-0.1
647,910	-		Sama_0524	0.29	-1.3
647,910	-		Sama_0524	0.29	-0.4
647,920	-		Sama_0524	0.30	-0.3
647,920	-		Sama_0524	0.30	+0.9
647,997	-		Sama_0524	0.36	-2.3
648,177	+		Sama_0524	0.52	-0.3
648,177	+		Sama_0524	0.52	-0.1
648,177	+		Sama_0524	0.52	-1.4
648,177	+		Sama_0524	0.52	-1.4
648,178	-		Sama_0524	0.52	+0.7
648,178	-		Sama_0524	0.52	+0.2
648,183	+		Sama_0524	0.52	+0.7
648,209	+		Sama_0524	0.54	-0.7
648,209	+		Sama_0524	0.54	-0.1
648,209	+		Sama_0524	0.54	-1.2
648,209	+		Sama_0524	0.54	-2.1
648,209	+		Sama_0524	0.54	-1.1
648,210	-		Sama_0524	0.54	-1.7
648,210	-		Sama_0524	0.54	+0.6
648,210	-		Sama_0524	0.54	-1.2
648,210	-		Sama_0524	0.54	-1.0
648,219	+		Sama_0524	0.55	+1.3
648,219	+		Sama_0524	0.55	+0.6
648,219	+		Sama_0524	0.55	-1.0
648,220	-		Sama_0524	0.55	-1.1
648,220	-		Sama_0524	0.55	+1.9
648,231	+		Sama_0524	0.56	-1.0
648,231	+		Sama_0524	0.56	-0.8
648,231	+		Sama_0524	0.56	+0.5
648,232	-		Sama_0524	0.56	-1.6
648,232	-		Sama_0524	0.56	-0.2
648,252	+		Sama_0524	0.58	-0.4
648,253	-		Sama_0524	0.58	-0.2
648,255	-		Sama_0524	0.58	-0.3
648,266	+		Sama_0524	0.59	-0.3
648,266	+		Sama_0524	0.59	-0.9
648,267	-		Sama_0524	0.59	-0.3
648,267	-		Sama_0524	0.59	+0.2
648,274	-		Sama_0524	0.60	+0.4
648,274	-		Sama_0524	0.60	-1.1
648,274	-		Sama_0524	0.60	-0.2
648,310	+		Sama_0524	0.63	-1.2
648,310	+		Sama_0524	0.63	-0.6
648,311	-		Sama_0524	0.63	+0.3
648,311	-		Sama_0524	0.63	-1.7
648,341	+		Sama_0524	0.66	-0.5
648,342	-		Sama_0524	0.66	-1.2
648,342	-		Sama_0524	0.66	+0.4
648,342	-		Sama_0524	0.66	-1.3
648,348	+		Sama_0524	0.66	+0.9
648,348	+		Sama_0524	0.66	+2.1
648,349	-		Sama_0524	0.66	-3.2
648,349	-		Sama_0524	0.66	-0.6
648,424	+		Sama_0524	0.73	-0.8
648,425	-		Sama_0524	0.73	-1.5
648,466	+		Sama_0524	0.76	+0.7
648,483	-		Sama_0524	0.78	-0.0
648,586	-		Sama_0524	0.87	-0.5
648,586	-		Sama_0524	0.87	+0.0
648,601	+		Sama_0524	0.88	-0.7
648,601	+		Sama_0524	0.88	-0.3
648,602	-		Sama_0524	0.88	+0.8
648,602	-		Sama_0524	0.88	+0.8
648,648	+				-1.2
648,648	+				-0.0
648,648	+				-0.8
648,648	+				-0.9
648,648	+				-0.0
648,668	+				-0.6
648,668	+				+0.1
648,668	+				-0.1
648,669	-				-1.7
648,669	-				-0.7
648,671	+				-0.5
648,671	+				+0.2
648,671	+				-0.3
648,671	+				+0.9
648,672	-				-0.4
648,672	-				-1.8
648,672	-				+0.3
648,672	-				+0.1
648,672	-				+0.7
648,705	+				+1.2
648,705	+				-0.5
648,705	+				-0.1
648,706	-				-1.1
648,738	+				+1.3
648,738	+				-0.5
648,738	+				-0.2
648,738	+				+0.3
648,738	+				+0.5
648,738	+				-0.6
648,739	-				-0.4
648,739	-				-1.7
648,739	-				-0.4
648,739	-				+0.9
648,739	-				+1.3
648,739	-				+1.2
648,739	-				+0.3
648,739	-				-0.3
648,874	+		Sama_0525	0.14	+1.1
648,874	+		Sama_0525	0.14	-0.4
648,875	-		Sama_0525	0.14	-0.4
648,875	-		Sama_0525	0.14	+0.9
648,889	+		Sama_0525	0.15	+1.3
648,889	+		Sama_0525	0.15	-0.2
648,889	+		Sama_0525	0.15	-0.1
648,889	+		Sama_0525	0.15	-2.6
648,890	-		Sama_0525	0.15	-0.1
648,890	-		Sama_0525	0.15	+0.9
648,898	+		Sama_0525	0.16	+0.0
648,898	+		Sama_0525	0.16	+0.2
648,898	+		Sama_0525	0.16	-1.1
648,899	-		Sama_0525	0.16	+0.5
648,914	+		Sama_0525	0.18	+0.1
648,914	+		Sama_0525	0.18	-0.1
648,914	+		Sama_0525	0.18	+0.1
648,914	+		Sama_0525	0.18	-1.6
648,915	-		Sama_0525	0.18	+0.9
648,915	-		Sama_0525	0.18	+0.7
648,915	-		Sama_0525	0.18	+0.5
648,915	-		Sama_0525	0.18	-0.6
648,952	+		Sama_0525	0.22	-0.8
648,952	+		Sama_0525	0.22	-0.8
648,952	+		Sama_0525	0.22	-1.1
648,952	+		Sama_0525	0.22	+0.1
648,952	+		Sama_0525	0.22	-0.3
648,953	-		Sama_0525	0.22	-0.3
648,953	-		Sama_0525	0.22	+0.3
648,953	-		Sama_0525	0.22	-0.9
648,954	+		Sama_0525	0.22	+0.2
648,954	+		Sama_0525	0.22	-1.8
648,966	+		Sama_0525	0.23	-0.8
648,967	-		Sama_0525	0.23	+0.7
648,967	-		Sama_0525	0.23	-1.9
648,968	+		Sama_0525	0.24	-0.3
648,968	+		Sama_0525	0.24	+0.9
648,968	+		Sama_0525	0.24	+0.0
648,968	+		Sama_0525	0.24	+0.2
648,968	+		Sama_0525	0.24	+1.1
648,968	+		Sama_0525	0.24	+1.1
648,968	+		Sama_0525	0.24	-1.3
648,969	-		Sama_0525	0.24	-0.3
648,969	-		Sama_0525	0.24	-0.9
648,969	-		Sama_0525	0.24	-0.1
649,027	+		Sama_0525	0.30	-0.7
649,027	+		Sama_0525	0.30	+0.9
649,027	+		Sama_0525	0.30	+0.6
649,027	+		Sama_0525	0.30	-0.3
649,027	+		Sama_0525	0.30	-1.0
649,027	+		Sama_0525	0.30	-0.9
649,028	-		Sama_0525	0.30	-0.7
649,028	-		Sama_0525	0.30	-1.6
649,028	-		Sama_0525	0.30	-0.1
649,028	-		Sama_0525	0.30	-0.7
649,028	-		Sama_0525	0.30	-1.0
649,028	-		Sama_0525	0.30	-0.1
649,047	+		Sama_0525	0.32	-1.2
649,049	+		Sama_0525	0.32	-0.2
649,049	+		Sama_0525	0.32	+0.9
649,049	+		Sama_0525	0.32	-0.8
649,050	-		Sama_0525	0.32	-1.8
649,050	-		Sama_0525	0.32	+0.6
649,050	-		Sama_0525	0.32	-0.1
649,050	-		Sama_0525	0.32	+0.2
649,098	+		Sama_0525	0.37	+0.3
649,128	-		Sama_0525	0.40	-0.5
649,128	-		Sama_0525	0.40	-0.8
649,128	-		Sama_0525	0.40	+0.1
649,175	+		Sama_0525	0.45	-0.5
649,175	+		Sama_0525	0.45	+0.2
649,331	+		Sama_0525	0.61	+0.1
649,331	+		Sama_0525	0.61	-0.4
649,331	+		Sama_0525	0.61	-2.4
649,331	+		Sama_0525	0.61	+0.6
649,331	+		Sama_0525	0.61	+0.8
649,331	+		Sama_0525	0.61	-0.6
649,332	-		Sama_0525	0.62	+0.5
649,332	-		Sama_0525	0.62	+0.3
649,353	-		Sama_0525	0.64	-0.5
649,404	-		Sama_0525	0.69	+1.8
649,404	-		Sama_0525	0.69	+0.3
649,416	-		Sama_0525	0.70	-0.1
649,443	-		Sama_0525	0.73	-2.1
649,479	+		Sama_0525	0.77	+1.3
649,479	+		Sama_0525	0.77	-0.4
649,479	+		Sama_0525	0.77	-1.0
649,550	+		Sama_0525	0.84	-0.1
649,564	-		Sama_0525	0.86	-0.7
649,564	-		Sama_0525	0.86	+1.4
649,578	+		Sama_0525	0.87	+0.5
649,579	-		Sama_0525	0.87	-1.5
649,584	+		Sama_0525	0.88	-0.7
649,584	+		Sama_0525	0.88	-1.7
649,584	+		Sama_0525	0.88	+0.2
649,585	-		Sama_0525	0.88	+0.0
649,585	-		Sama_0525	0.88	-2.1
649,585	-		Sama_0525	0.88	-0.3
649,585	-		Sama_0525	0.88	-1.1
649,606	+				-0.7
649,607	-				+0.7
649,619	+				-2.7
649,619	+				-0.4
649,619	+				+1.4
649,620	-				+0.5
649,620	-				+0.3
649,620	-				-2.2
649,620	-				-2.6
649,620	-				+1.2
649,664	+				+0.2
649,664	+				+0.2
649,664	+				-0.1
649,664	+				-0.3
649,664	+				+0.5
649,664	+				-0.6
649,665	-				+1.5
649,665	-				-0.3
649,665	-				-1.3
649,665	-				+0.5
649,665	-				-1.4
649,665	-				-1.6
649,684	+				-1.9
649,684	+				+0.2
649,685	-				+1.5
649,685	-				-0.5
649,687	+				-0.8
649,687	+				-0.9
649,687	+				-0.8
649,687	+				-0.7
649,729	+				-0.7
649,729	+				+0.3
649,729	+				-0.5
649,730	-				-0.2