Strain Fitness in Shewanella amazonensis SB2B around Sama_0081

Experiment: Cobalt chloride 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cobalt chloride 0.078125 mM
88,418	+		Sama_0080	0.41	-0.8
88,467	+		Sama_0080	0.45	-0.4
88,468	-		Sama_0080	0.45	-0.2
88,472	+		Sama_0080	0.45	+2.1
88,473	-		Sama_0080	0.46	+0.3
88,494	+		Sama_0080	0.47	-0.4
88,494	+		Sama_0080	0.47	-0.6
88,495	-		Sama_0080	0.47	-1.5
88,495	-		Sama_0080	0.47	-0.7
88,495	-		Sama_0080	0.47	-1.1
88,564	+		Sama_0080	0.53	-0.1
88,564	+		Sama_0080	0.53	+0.3
88,564	+		Sama_0080	0.53	-1.1
88,564	+		Sama_0080	0.53	-1.1
88,564	+		Sama_0080	0.53	+0.9
88,564	+		Sama_0080	0.53	-0.3
88,564	+		Sama_0080	0.53	-0.1
88,564	+		Sama_0080	0.53	-0.3
88,564	+		Sama_0080	0.53	+0.1
88,564	+		Sama_0080	0.53	+0.6
88,564	+		Sama_0080	0.53	-0.7
88,564	+		Sama_0080	0.53	+0.3
88,564	+		Sama_0080	0.53	-1.2
88,565	-		Sama_0080	0.53	-0.5
88,565	-		Sama_0080	0.53	-2.0
88,565	-		Sama_0080	0.53	+1.0
88,565	-		Sama_0080	0.53	+0.1
88,565	-		Sama_0080	0.53	-0.7
88,565	-		Sama_0080	0.53	-0.6
88,565	-		Sama_0080	0.53	-0.9
88,565	-		Sama_0080	0.53	+2.1
88,565	-		Sama_0080	0.53	-0.4
88,565	-		Sama_0080	0.53	-0.4
88,565	-		Sama_0080	0.53	+1.2
88,638	+		Sama_0080	0.59	-0.5
88,638	+		Sama_0080	0.59	+0.1
88,638	+		Sama_0080	0.59	-0.2
88,638	+		Sama_0080	0.59	-0.6
88,638	+		Sama_0080	0.59	+0.9
88,638	+		Sama_0080	0.59	-0.5
88,638	+		Sama_0080	0.59	-0.7
88,638	+		Sama_0080	0.59	+0.5
88,638	+		Sama_0080	0.59	-1.7
88,639	-		Sama_0080	0.59	-0.9
88,639	-		Sama_0080	0.59	+0.5
88,639	-		Sama_0080	0.59	+0.4
88,639	-		Sama_0080	0.59	-2.0
88,639	-		Sama_0080	0.59	+0.4
88,639	-		Sama_0080	0.59	+0.9
88,639	-		Sama_0080	0.59	-1.4
88,639	-		Sama_0080	0.59	-0.0
88,683	+		Sama_0080	0.62	-2.6
88,688	+		Sama_0080	0.63	-0.9
88,688	+		Sama_0080	0.63	-0.6
88,688	+		Sama_0080	0.63	-0.4
88,688	+		Sama_0080	0.63	-0.9
88,688	+		Sama_0080	0.63	-1.7
88,688	+		Sama_0080	0.63	-0.5
88,689	-		Sama_0080	0.63	+0.1
88,689	-		Sama_0080	0.63	-0.3
88,689	-		Sama_0080	0.63	+0.7
88,689	-		Sama_0080	0.63	-0.5
88,821	+		Sama_0080	0.74	-0.8
88,821	+		Sama_0080	0.74	+0.1
88,822	-		Sama_0080	0.74	+1.7
88,822	-		Sama_0080	0.74	+0.7
88,822	-		Sama_0080	0.74	+1.1
88,864	+		Sama_0080	0.77	-0.1
88,864	+		Sama_0080	0.77	-0.4
88,864	+		Sama_0080	0.77	-0.7
88,864	+		Sama_0080	0.77	-0.7
88,864	+		Sama_0080	0.77	-0.8
88,865	-		Sama_0080	0.77	-0.0
88,918	-		Sama_0080	0.81	-0.5
88,918	-		Sama_0080	0.81	+0.7
88,977	+		Sama_0080	0.86	+0.3
88,978	-		Sama_0080	0.86	-1.0
88,978	-		Sama_0080	0.86	-0.1
88,978	-		Sama_0080	0.86	-0.3
89,034	+				+0.2
89,034	+				+0.1
89,034	+				+0.3
89,035	-				-0.2
89,080	+				-1.6
89,080	+				+0.5
89,080	+				+0.9
89,080	+				-1.0
89,081	-				+0.7
89,081	-				-1.4
89,081	-				-0.9
89,081	-				-0.5
89,081	-				+0.1
89,114	+				+0.7
89,114	+				+0.3
89,115	-				+1.2
89,115	-				-0.0
89,115	-				-0.0
89,115	-				+1.3
89,115	-				+1.3
89,120	+				-1.0
89,121	-				+1.3
89,121	-				-1.5
89,121	-				+1.3
89,169	+				-0.5
89,169	+				-2.0
89,169	+				-0.7
89,169	+				+0.2
89,169	+				+0.1
89,169	+				-0.0
89,169	+				-2.1
89,170	-				+0.1
89,170	-				+1.5
89,170	-				-0.9
89,170	-				+0.2
89,170	-				+0.8
89,170	-				-1.4
89,170	-				-0.4
89,170	-				+0.6
89,170	-				-2.0
89,170	-				+0.2
89,173	+				+1.3
89,173	+				-1.2
89,174	-				-0.3
89,187	-				+0.3
89,196	-				+1.3
89,196	-				-0.0
89,197	+				-1.1
89,203	+				+0.2
89,203	+				-0.7
89,204	-				+0.7
89,204	-				-0.6
89,221	+				+0.0
89,221	+				+0.1
89,222	-				-0.5
89,222	-				-0.9
89,226	+				-1.1
89,226	+				-0.1
89,226	+				-1.4
89,226	+				-0.5
89,227	-				-0.8
89,227	-				+0.9
89,227	-				+0.8
89,235	+				-0.0
89,235	+				-1.6
89,235	+				+1.0
89,236	-				-0.8
89,236	-				-0.5
89,236	-				-0.2
89,271	-				-0.5
89,271	-				-1.8
89,271	-				-0.1
89,271	-				-1.8
89,274	+				-0.5
89,274	+				+0.1
89,274	+				-1.1
89,275	-				+1.3
89,275	-				+0.4
89,275	-				-1.3
89,275	-				+0.1
89,275	-				+0.9
89,275	-				-1.6
89,280	+				-0.4
89,280	+				-0.7
89,280	+				-0.2
89,280	+				+0.3
89,280	+				-0.7
89,280	+				-0.7
89,280	+				+0.2
89,280	+				-1.2
89,280	+				-1.1
89,280	+				-1.5
89,281	-				+0.4
89,281	-				+0.5
89,281	-				+0.4
89,281	-				-0.3
89,281	-				-0.0
89,281	-				+0.9
89,281	-				-1.3
89,281	-				-0.6
89,281	-				-0.3
89,282	+				-1.1
89,283	-				-0.5
89,283	-				-0.5
89,283	-				+0.9
89,284	+				-0.4
89,284	+				-1.4
89,284	+				+0.8
89,284	+				-0.2
89,284	+				-0.0
89,284	+				+0.9
89,285	-				+1.6
89,285	-				+0.9
89,285	-				+0.0
89,285	-				+0.1
89,297	+				-1.1
89,297	+				-1.2
89,298	-				+0.2
89,298	-				-1.6
89,299	+				-1.2
89,299	+				-1.0
89,300	-				-0.8
89,350	+				-1.0
89,393	+				-1.9
89,395	+				-0.7
89,395	+				-0.2
89,395	+				-1.3
89,395	+				+0.5
89,395	+				+0.7
89,395	+				-0.7
89,396	-				-0.5
89,396	-				-1.0
89,396	-				-2.7
89,396	-				-0.3
89,396	-				-0.5
89,399	+				-1.0
89,399	+				-1.8
89,399	+				-0.4
89,399	+				+0.9
89,400	-				-1.0
89,400	-				-0.4
89,436	+		Sama_0081	0.10	+0.3
89,487	+		Sama_0081	0.18	-0.7
89,552	+		Sama_0081	0.27	+0.1
89,552	+		Sama_0081	0.27	+1.2
89,552	+		Sama_0081	0.27	-1.3
89,553	-		Sama_0081	0.27	+0.3
89,553	-		Sama_0081	0.27	-1.1
89,553	-		Sama_0081	0.27	-2.0
89,556	+		Sama_0081	0.28	-1.5
89,556	+		Sama_0081	0.28	-0.4
89,557	-		Sama_0081	0.28	-0.9
89,557	-		Sama_0081	0.28	-0.7
89,557	-		Sama_0081	0.28	-0.9
89,598	+		Sama_0081	0.33	-0.1
89,599	-		Sama_0081	0.34	-0.3
89,608	-		Sama_0081	0.35	-0.9
89,695	-		Sama_0081	0.47	+0.8
89,695	-		Sama_0081	0.47	+0.9
89,731	+		Sama_0081	0.52	-0.3
89,731	+		Sama_0081	0.52	-1.4
89,731	+		Sama_0081	0.52	-0.1
89,732	-		Sama_0081	0.52	-2.3
89,817	+		Sama_0081	0.65	-1.9
89,817	+		Sama_0081	0.65	-0.8
89,817	+		Sama_0081	0.65	+0.1
89,818	-		Sama_0081	0.65	-0.0
89,818	-		Sama_0081	0.65	-1.4
89,818	-		Sama_0081	0.65	-1.4
89,818	-		Sama_0081	0.65	-1.6
89,818	-		Sama_0081	0.65	-0.6
89,818	-		Sama_0081	0.65	+0.3
89,818	-		Sama_0081	0.65	-1.1
89,818	-		Sama_0081	0.65	+0.4
89,851	+		Sama_0081	0.69	+0.2
89,851	+		Sama_0081	0.69	-0.7
89,851	+		Sama_0081	0.69	-1.0
89,851	+		Sama_0081	0.69	+0.0
89,851	+		Sama_0081	0.69	+0.1
89,851	+		Sama_0081	0.69	-0.0
89,851	+		Sama_0081	0.69	-1.2
89,852	-		Sama_0081	0.70	-2.1
89,852	-		Sama_0081	0.70	-0.5
89,852	-		Sama_0081	0.70	-0.1
89,852	-		Sama_0081	0.70	-1.0
89,852	-		Sama_0081	0.70	-1.8
89,852	-		Sama_0081	0.70	-1.7
89,852	-		Sama_0081	0.70	-0.5
89,889	+		Sama_0081	0.75	-1.3
89,889	+		Sama_0081	0.75	-1.3
89,889	+		Sama_0081	0.75	+1.0
89,889	+		Sama_0081	0.75	+0.3
89,890	-		Sama_0081	0.75	-0.5
89,890	-		Sama_0081	0.75	-1.3
89,890	-		Sama_0081	0.75	-1.1
89,890	-		Sama_0081	0.75	-0.7
89,894	+		Sama_0081	0.75	-1.1
89,894	+		Sama_0081	0.75	+0.6
89,894	+		Sama_0081	0.75	-2.1
89,894	+		Sama_0081	0.75	+0.2
89,894	+		Sama_0081	0.75	-1.1
89,895	-		Sama_0081	0.76	-0.8
89,895	-		Sama_0081	0.76	-2.2
89,895	-		Sama_0081	0.76	-0.3
89,895	-		Sama_0081	0.76	+0.2
89,904	+		Sama_0081	0.77	+1.7
89,904	+		Sama_0081	0.77	-0.4
89,904	+		Sama_0081	0.77	-0.7
89,905	-		Sama_0081	0.77	-2.7
89,905	-		Sama_0081	0.77	-0.4
89,911	-		Sama_0081	0.78	-0.6
89,937	+		Sama_0081	0.82	-1.2
89,937	+		Sama_0081	0.82	-0.4
89,937	+		Sama_0081	0.82	-1.4
89,937	+		Sama_0081	0.82	+0.8
89,937	+		Sama_0081	0.82	+0.2
89,938	-		Sama_0081	0.82	-0.3
89,938	-		Sama_0081	0.82	-0.5
89,939	+		Sama_0081	0.82	-0.9
89,940	-		Sama_0081	0.82	+0.3
89,977	-		Sama_0081	0.87	-0.5
89,996	+				+1.3
89,997	-				-0.5
90,054	+				-0.9
90,054	+				+0.6
90,054	+				-0.4
90,054	+				-1.3
90,054	+				+1.7
90,055	-				+0.1
90,055	-				+0.5
90,055	-				-0.9
90,055	-				-0.5
90,055	-				+1.3
90,060	+				-1.2
90,060	+				+0.1
90,060	+				+1.1
90,061	-				-1.4
90,064	+				-0.1
90,064	+				-0.4
90,064	+				-0.1
90,064	+				+0.5
90,064	+				+0.3
90,064	+				+0.8
90,064	+				-1.0
90,065	-				-1.6
90,065	-				-1.1
90,065	-				+0.2
90,065	-				+1.3
90,082	+				-1.7
90,082	+				+0.6
90,082	+				-1.6
90,083	-				-1.2
90,092	+				+1.7
90,092	+				+0.1
90,157	+				-0.2
90,170	-				+0.7
90,176	+				-0.3
90,183	-				-1.7
90,183	-				-0.3
90,191	+				-2.5
90,242	+				-1.1
90,242	+				-0.3
90,247	+				-0.6
90,248	-				+0.3
90,314	+				-2.5
90,314	+				-0.8
90,335	+				+0.4
90,335	+				+0.9
90,335	+				+0.7
90,336	-				-1.0
90,336	-				-0.9
90,336	-				+0.4
90,336	-				+1.1
90,336	-				+1.7
90,344	-				-0.7
90,370	+				-2.3
90,370	+				-0.8
90,370	+				-2.6
90,370	+				-0.5
90,370	+				+0.0
90,371	-				-1.3
90,371	-				-0.4
90,371	-				+0.7
90,371	-				-2.7
90,373	+				-1.4
90,373	+				-2.2
90,374	-				-0.8
90,374	-				-0.9
90,484	-				+0.2
90,493	-				+0.7
90,546	-				-0.6
90,575	-		Sama_0082	0.11	-2.1
90,677	+		Sama_0082	0.15	+1.0
90,678	-		Sama_0082	0.15	-1.1
90,678	-		Sama_0082	0.15	+2.1
90,684	+		Sama_0082	0.15	-0.7
90,684	+		Sama_0082	0.15	-0.2
90,684	+		Sama_0082	0.15	+0.5
90,712	+		Sama_0082	0.16	+0.9
90,712	+		Sama_0082	0.16	-1.8
90,712	+		Sama_0082	0.16	-1.6
90,713	-		Sama_0082	0.16	-0.8
90,713	-		Sama_0082	0.16	-1.0
90,713	-		Sama_0082	0.16	+0.3
90,713	-		Sama_0082	0.16	+0.2
90,713	-		Sama_0082	0.16	+0.0
90,713	-		Sama_0082	0.16	-1.3
90,713	-		Sama_0082	0.16	-0.4
90,715	+		Sama_0082	0.16	-1.5
90,715	+		Sama_0082	0.16	-0.1
90,715	+		Sama_0082	0.16	-2.7
90,723	+		Sama_0082	0.17	+0.4
90,724	-		Sama_0082	0.17	-0.9
90,746	-		Sama_0082	0.18	+0.1
90,746	-		Sama_0082	0.18	-1.0
90,746	-		Sama_0082	0.18	-0.3
90,746	-		Sama_0082	0.18	-1.6
90,748	-		Sama_0082	0.18	+1.7
90,761	+		Sama_0082	0.18	+0.5
90,761	+		Sama_0082	0.18	-0.9
90,761	+		Sama_0082	0.18	-0.0
90,761	+		Sama_0082	0.18	-0.5
90,761	+		Sama_0082	0.18	-2.0
90,761	+		Sama_0082	0.18	-0.6
90,761	+		Sama_0082	0.18	-1.4
90,761	+		Sama_0082	0.18	-1.0
90,761	+		Sama_0082	0.18	-1.3
90,761	+		Sama_0082	0.18	-0.4
90,761	+		Sama_0082	0.18	-0.4
90,761	+		Sama_0082	0.18	-0.1
90,761	+		Sama_0082	0.18	-1.5
90,761	+		Sama_0082	0.18	-0.0
90,761	+		Sama_0082	0.18	-0.4
90,761	+		Sama_0082	0.18	-2.0
90,761	+		Sama_0082	0.18	+0.1
90,761	+		Sama_0082	0.18	+1.3
90,761	+		Sama_0082	0.18	-1.0
90,762	-		Sama_0082	0.18	-0.8
90,762	-		Sama_0082	0.18	-2.2
90,762	-		Sama_0082	0.18	-1.1
90,762	-		Sama_0082	0.18	+0.2
90,762	-		Sama_0082	0.18	-0.4
90,762	-		Sama_0082	0.18	+0.7
90,762	-		Sama_0082	0.18	-1.2
90,762	-		Sama_0082	0.18	-0.2
90,762	-		Sama_0082	0.18	-0.6
90,762	-		Sama_0082	0.18	+0.2
90,762	-		Sama_0082	0.18	-1.2
90,762	-		Sama_0082	0.18	+1.0
90,766	+		Sama_0082	0.18	-2.4
90,766	+		Sama_0082	0.18	-0.0
90,766	+		Sama_0082	0.18	-1.2
90,766	+		Sama_0082	0.18	-1.9
90,767	-		Sama_0082	0.18	-2.1
90,775	+		Sama_0082	0.19	-1.0
90,775	+		Sama_0082	0.19	-0.8
90,776	-		Sama_0082	0.19	+1.7
90,776	-		Sama_0082	0.19	-1.0
90,793	+		Sama_0082	0.19	-1.3
90,794	-		Sama_0082	0.19	-0.4
90,806	+		Sama_0082	0.20	+0.4
90,806	+		Sama_0082	0.20	+0.2
90,806	+		Sama_0082	0.20	-1.7
90,807	-		Sama_0082	0.20	+0.5
90,807	-		Sama_0082	0.20	-0.8
90,836	+		Sama_0082	0.21	-1.4
90,836	+		Sama_0082	0.21	+1.1
90,836	+		Sama_0082	0.21	-0.7
90,837	-		Sama_0082	0.21	-0.5
90,837	-		Sama_0082	0.21	-0.9
90,837	-		Sama_0082	0.21	+0.3
90,854	+		Sama_0082	0.22	-1.6
90,854	+		Sama_0082	0.22	-0.3
90,855	-		Sama_0082	0.22	-0.8
90,886	+		Sama_0082	0.23	-1.1
90,886	+		Sama_0082	0.23	+0.3
90,886	+		Sama_0082	0.23	-0.2
90,886	+		Sama_0082	0.23	+0.6
90,886	+		Sama_0082	0.23	-0.9
90,886	+		Sama_0082	0.23	-1.7
90,887	-		Sama_0082	0.23	+0.5
90,887	-		Sama_0082	0.23	-0.9
90,887	-		Sama_0082	0.23	+1.3
90,887	-		Sama_0082	0.23	+0.8
90,887	-		Sama_0082	0.23	-1.5
90,887	-		Sama_0082	0.23	-1.5
90,887	-		Sama_0082	0.23	-0.3
90,887	-		Sama_0082	0.23	-0.8
91,000	+		Sama_0082	0.28	+1.0
91,000	+		Sama_0082	0.28	+0.4
91,000	+		Sama_0082	0.28	-0.3
91,000	+		Sama_0082	0.28	-0.5
91,000	+		Sama_0082	0.28	-0.7
91,000	+		Sama_0082	0.28	-2.2
91,000	+		Sama_0082	0.28	-0.2
91,000	+		Sama_0082	0.28	+0.2
91,000	+		Sama_0082	0.28	-0.0
91,000	+		Sama_0082	0.28	+0.3
91,000	+		Sama_0082	0.28	-0.3
91,000	+		Sama_0082	0.28	-0.7
91,000	+		Sama_0082	0.28	-0.7
91,000	+		Sama_0082	0.28	+0.3
91,000	+		Sama_0082	0.28	-0.7
91,000	+		Sama_0082	0.28	-1.1
91,000	+		Sama_0082	0.28	-0.0
91,000	+		Sama_0082	0.28	-0.1
91,000	+		Sama_0082	0.28	-0.7
91,001	-		Sama_0082	0.28	-1.0
91,001	-		Sama_0082	0.28	-0.1
91,001	-		Sama_0082	0.28	-1.3
91,001	-		Sama_0082	0.28	+0.1
91,001	-		Sama_0082	0.28	-0.4
91,001	-		Sama_0082	0.28	-1.2
91,001	-		Sama_0082	0.28	-0.5
91,001	-		Sama_0082	0.28	-0.9
91,001	-		Sama_0082	0.28	-0.7
91,001	-		Sama_0082	0.28	-2.0
91,001	-		Sama_0082	0.28	+1.1
91,001	-		Sama_0082	0.28	-1.0
91,001	-		Sama_0082	0.28	-0.1
91,001	-		Sama_0082	0.28	-0.8
91,001	-		Sama_0082	0.28	-1.5
91,001	-		Sama_0082	0.28	-1.6
91,001	-		Sama_0082	0.28	+0.8
91,006	+		Sama_0082	0.28	-0.5
91,007	-		Sama_0082	0.28	-1.8
91,007	-		Sama_0082	0.28	-2.3
91,007	-		Sama_0082	0.28	-0.2
91,007	-		Sama_0082	0.28	-0.2
91,007	-		Sama_0082	0.28	-1.3