Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3421

Experiment: m.b. Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nickel (II) chloride 1 mM
3,600,514	+		Dshi_3420	0.74	+0.5
3,600,522	-		Dshi_3420	0.74	+0.8
3,600,557	-		Dshi_3420	0.76	-0.4
3,600,595	-		Dshi_3420	0.79	+0.5
3,600,620	+		Dshi_3420	0.80	+0.1
3,600,678	+		Dshi_3420	0.84	+0.8
3,600,819	+				+2.1
3,600,827	-				-0.4
3,600,894	-				-0.9
3,600,953	+				+0.3
3,600,967	+				-1.2
3,600,967	-				+0.8
3,600,975	-				+0.4
3,600,975	-				-0.2
3,600,975	-				+0.0
3,601,005	+				-1.5
3,601,007	+				-0.5
3,601,013	-				-0.6
3,601,015	+				-0.8
3,601,015	-				-0.6
3,601,023	-				+0.5
3,601,023	-				-0.9
3,601,026	+				-0.1
3,601,033	+				-1.2
3,601,034	-				+0.6
3,601,034	-				+0.5
3,601,034	-				-0.3
3,601,034	-				+0.1
3,601,041	-				-0.4
3,601,041	-				-1.5
3,601,060	+				+0.7
3,601,060	+				-0.8
3,601,060	+				-3.1
3,601,068	-				-0.2
3,601,075	-				-0.6
3,601,094	-				-0.0
3,601,094	-				-0.2
3,601,110	-				+0.8
3,601,130	+				+0.4
3,601,137	+				-0.4
3,601,138	-				-0.6
3,601,145	-				-0.5
3,601,147	-				+0.3
3,601,153	+				+0.2
3,601,161	-				-1.4
3,601,239	+				+0.6
3,601,239	+				-0.2
3,601,244	+				-1.2
3,601,252	-				-0.4
3,601,257	-				+1.1
3,601,277	+				-0.4
3,601,304	-				-0.0
3,601,312	+				-0.4
3,601,325	+				+0.7
3,601,333	-				+0.1
3,601,356	-				-0.5
3,601,375	-				-0.0
3,601,399	-				-0.5
3,601,405	+				-0.5
3,601,412	+				-0.5
3,601,412	+				-0.3
3,601,419	-				+0.2
3,601,420	-				+0.1
3,601,430	-				-1.1
3,601,460	-				-0.7
3,601,480	+				-1.2
3,601,488	-				+0.4
3,601,488	-				-0.7
3,601,488	-				-0.7
3,601,526	+				-0.9
3,601,534	-				-0.2
3,601,536	-				-0.6
3,601,539	-				+0.3
3,601,568	+				-0.3
3,601,568	+				-1.6
3,601,576	-				+0.6
3,601,578	+				+0.2
3,601,578	+				+0.0
3,601,586	-				-0.4
3,601,586	-				-0.8
3,601,591	-				-0.7
3,601,647	+				-0.1
3,601,673	+		Dshi_3421	0.11	-0.5
3,601,673	+		Dshi_3421	0.11	-0.0
3,601,681	-		Dshi_3421	0.11	-1.1
3,601,709	+		Dshi_3421	0.13	-1.2
3,601,734	-		Dshi_3421	0.15	-0.3
3,601,747	+		Dshi_3421	0.16	-1.3
3,601,912	-		Dshi_3421	0.27	+0.2
3,601,962	+		Dshi_3421	0.30	-0.1
3,601,970	-		Dshi_3421	0.31	+0.4
3,601,972	-		Dshi_3421	0.31	-0.6
3,602,111	+		Dshi_3421	0.40	-0.6
3,602,111	+		Dshi_3421	0.40	-0.7
3,602,124	-		Dshi_3421	0.41	-0.5
3,602,130	+		Dshi_3421	0.41	+1.0
3,602,155	+		Dshi_3421	0.43	-1.9
3,602,193	+		Dshi_3421	0.46	+0.2
3,602,193	+		Dshi_3421	0.46	-0.7
3,602,193	+		Dshi_3421	0.46	+0.4
3,602,193	+		Dshi_3421	0.46	-0.1
3,602,193	+		Dshi_3421	0.46	-0.7
3,602,193	+		Dshi_3421	0.46	-0.1
3,602,201	-		Dshi_3421	0.46	-0.4
3,602,223	+		Dshi_3421	0.48	+1.7
3,602,231	-		Dshi_3421	0.48	-3.0
3,602,268	+		Dshi_3421	0.51	+0.1
3,602,268	+		Dshi_3421	0.51	-0.5
3,602,268	+		Dshi_3421	0.51	+0.8
3,602,268	+		Dshi_3421	0.51	-0.7
3,602,268	+		Dshi_3421	0.51	-0.4
3,602,276	-		Dshi_3421	0.51	-0.2
3,602,276	-		Dshi_3421	0.51	+2.1
3,602,294	-		Dshi_3421	0.52	+0.3
3,602,296	+		Dshi_3421	0.53	-1.0
3,602,296	+		Dshi_3421	0.53	-0.4
3,602,296	+		Dshi_3421	0.53	+0.5
3,602,304	-		Dshi_3421	0.53	-1.8
3,602,316	+		Dshi_3421	0.54	+0.8
3,602,336	+		Dshi_3421	0.55	-0.1
3,602,361	-		Dshi_3421	0.57	+0.7
3,602,391	-		Dshi_3421	0.59	-0.2
3,602,413	+		Dshi_3421	0.60	-0.0
3,602,458	+		Dshi_3421	0.63	+1.4
3,602,458	+		Dshi_3421	0.63	-0.3
3,602,471	-		Dshi_3421	0.64	+0.3
3,602,583	-		Dshi_3421	0.72	-2.3
3,602,662	-		Dshi_3421	0.77	-0.4
3,602,742	-		Dshi_3421	0.82	-0.3
3,602,742	-		Dshi_3421	0.82	-1.4
3,602,756	-		Dshi_3421	0.83	-0.4
3,602,861	-				-0.8
3,602,866	-				+1.0
3,602,903	+				+0.1
3,602,951	+				-0.8
3,602,997	+				-0.4
3,603,028	+				-1.0
3,603,109	+		Dshi_3422	0.18	+0.2
3,603,129	-		Dshi_3422	0.22	+0.5
3,603,250	+		Dshi_3422	0.42	-1.1
3,603,263	-		Dshi_3422	0.44	+0.0
3,603,311	+		Dshi_3422	0.52	-1.0
3,603,321	-		Dshi_3422	0.54	-1.3
3,603,321	-		Dshi_3422	0.54	+0.7
3,603,409	+		Dshi_3422	0.69	+0.5
3,603,411	+		Dshi_3422	0.69	-0.1
3,603,412	-		Dshi_3422	0.69	-0.3
3,603,422	-		Dshi_3422	0.71	-0.5
3,603,446	+		Dshi_3422	0.75	+0.8
3,603,469	+		Dshi_3422	0.79	-0.0
3,603,490	-		Dshi_3422	0.82	+0.8
3,603,512	+		Dshi_3422	0.86	-0.2
3,603,538	-				-0.4
3,603,574	-				+0.7
3,603,589	+				-0.3
3,603,633	-				+0.1
3,603,662	-		Dshi_3423	0.11	-0.7
3,603,692	+		Dshi_3423	0.17	-0.3
3,603,692	+		Dshi_3423	0.17	+0.3
3,603,692	+		Dshi_3423	0.17	-1.1
3,603,692	+		Dshi_3423	0.17	-0.5
3,603,700	-		Dshi_3423	0.18	-1.1
3,603,700	-		Dshi_3423	0.18	-1.4
3,603,700	-		Dshi_3423	0.18	-0.6
3,603,758	-		Dshi_3423	0.28	-0.7
3,603,760	+		Dshi_3423	0.28	-0.9
3,603,760	+		Dshi_3423	0.28	-0.0
3,603,760	+		Dshi_3423	0.28	-0.5
3,603,768	-		Dshi_3423	0.30	-0.7
3,603,793	+		Dshi_3423	0.34	+0.1
3,603,796	+		Dshi_3423	0.35	-0.8
3,603,801	-		Dshi_3423	0.36	-0.9
3,603,803	+		Dshi_3423	0.36	+0.5
3,603,803	+		Dshi_3423	0.36	-1.0
3,603,811	-		Dshi_3423	0.37	-2.1
3,603,811	-		Dshi_3423	0.37	-0.3
3,603,811	-		Dshi_3423	0.37	+0.2
3,603,811	-		Dshi_3423	0.37	-1.3
3,603,811	-		Dshi_3423	0.37	-0.3
3,603,811	-		Dshi_3423	0.37	+0.4
3,603,811	-		Dshi_3423	0.37	-0.2
3,603,811	-		Dshi_3423	0.37	-0.1
3,603,811	-		Dshi_3423	0.37	+0.1
3,603,816	+		Dshi_3423	0.38	+0.9
3,603,823	-		Dshi_3423	0.39	-0.4
3,603,826	+		Dshi_3423	0.40	-0.4
3,603,826	+		Dshi_3423	0.40	+0.6
3,603,839	-		Dshi_3423	0.42	-0.1
3,603,843	+		Dshi_3423	0.43	-1.0
3,603,843	+		Dshi_3423	0.43	-0.3
3,603,843	+		Dshi_3423	0.43	-1.4
3,603,851	-		Dshi_3423	0.44	+0.3
3,603,851	-		Dshi_3423	0.44	-0.4
3,603,856	+		Dshi_3423	0.45	+1.2
3,603,856	+		Dshi_3423	0.45	-0.1
3,603,856	+		Dshi_3423	0.45	-0.5
3,603,856	+		Dshi_3423	0.45	-0.7
3,603,857	-		Dshi_3423	0.45	-1.2
3,603,864	-		Dshi_3423	0.47	-0.3
3,603,864	-		Dshi_3423	0.47	+0.5
3,603,864	-		Dshi_3423	0.47	-2.6
3,603,874	+		Dshi_3423	0.48	-0.6
3,603,877	-		Dshi_3423	0.49	-0.5
3,603,877	-		Dshi_3423	0.49	+0.8
3,603,883	+		Dshi_3423	0.50	+0.1
3,603,910	+		Dshi_3423	0.55	-0.7
3,603,914	+		Dshi_3423	0.55	-1.0
3,603,918	-		Dshi_3423	0.56	-0.1
3,603,932	-		Dshi_3423	0.58	-0.1
3,603,932	-		Dshi_3423	0.58	-0.9
3,603,940	-		Dshi_3423	0.60	-0.0
3,603,942	-		Dshi_3423	0.60	+1.1
3,603,942	-		Dshi_3423	0.60	-0.4
3,603,946	-		Dshi_3423	0.61	-0.1
3,603,958	+		Dshi_3423	0.63	-0.3
3,603,966	-		Dshi_3423	0.64	-0.2
3,603,967	+		Dshi_3423	0.64	-0.7
3,603,967	+		Dshi_3423	0.64	-2.4
3,603,967	+		Dshi_3423	0.64	-0.4
3,603,975	-		Dshi_3423	0.66	+1.4
3,603,975	-		Dshi_3423	0.66	+0.3
3,603,975	-		Dshi_3423	0.66	-0.4
3,603,975	-		Dshi_3423	0.66	-0.3
3,603,975	-		Dshi_3423	0.66	-0.0
3,603,975	-		Dshi_3423	0.66	-1.4
3,603,975	-		Dshi_3423	0.66	+0.0
3,603,975	-		Dshi_3423	0.66	-0.9
3,603,975	-		Dshi_3423	0.66	-0.2
3,603,975	-		Dshi_3423	0.66	-0.6
3,603,975	-		Dshi_3423	0.66	-1.3
3,603,977	+		Dshi_3423	0.66	-0.7
3,603,977	+		Dshi_3423	0.66	+0.2
3,603,977	+		Dshi_3423	0.66	+1.2
3,603,977	+		Dshi_3423	0.66	+0.7
3,603,980	-		Dshi_3423	0.67	-2.2
3,603,980	-		Dshi_3423	0.67	-0.2
3,603,985	+		Dshi_3423	0.68	+0.2
3,603,985	-		Dshi_3423	0.68	-0.2
3,603,985	-		Dshi_3423	0.68	-0.5
3,603,998	+		Dshi_3423	0.70	-1.3