Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3055 and Dshi_3056 overlap by 4 nucleotides Dshi_3056 and Dshi_3057 are separated by 164 nucleotides Dshi_3057 and Dshi_3058 are separated by 288 nucleotides
Dshi_3055: Dshi_3055 - protein of unknown function DUF214 (RefSeq), at 3,223,182 to 3,224,075
_3055
Dshi_3056: Dshi_3056 - ABC transporter related (RefSeq), at 3,224,072 to 3,224,743
_3056
Dshi_3057: Dshi_3057 - MJ0042 family finger-like protein (RefSeq), at 3,224,908 to 3,225,654
_3057
Dshi_3058: Dshi_3058 - hypothetical protein (RefSeq), at 3,225,943 to 3,228,627
_3058
Position (kb)
3224
3225
3226 Strain fitness (log2 ratio)
-2
-1
0
1 at 3224.017 kb on + strand at 3224.077 kb on + strand at 3224.281 kb on + strand, within Dshi_3056 at 3224.438 kb on - strand, within Dshi_3056 at 3224.724 kb on + strand at 3224.746 kb on - strand at 3224.754 kb on - strand at 3224.836 kb on + strand at 3225.746 kb on + strand at 3225.870 kb on - strand at 3226.090 kb on - strand at 3226.090 kb on - strand at 3226.154 kb on + strand at 3226.632 kb on + strand, within Dshi_3058 at 3226.640 kb on - strand, within Dshi_3058
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 3,224,017 + -0.5 3,224,077 + -1.1 3,224,281 + Dshi_3056 0.31 -0.3 3,224,438 - Dshi_3056 0.54 -0.2 3,224,724 + +0.3 3,224,746 - -2.2 3,224,754 - +0.6 3,224,836 + -1.1 3,225,746 + +0.2 3,225,870 - +0.0 3,226,090 - -1.1 3,226,090 - +0.0 3,226,154 + -0.1 3,226,632 + Dshi_3058 0.26 +1.0 3,226,640 - Dshi_3058 0.26 +0.8
Or see this region's nucleotide sequence