Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2412

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2411 and Dshi_2412 are separated by 114 nucleotidesDshi_2412 and Dshi_2413 are separated by 162 nucleotides Dshi_2411: Dshi_2411 - protein of unknown function DUF198 (RefSeq), at 2,548,194 to 2,549,297 _2411 Dshi_2412: Dshi_2412 - Chloride channel core (RefSeq), at 2,549,412 to 2,551,100 _2412 Dshi_2413: Dshi_2413 - DNA repair protein RecN (RefSeq), at 2,551,263 to 2,552,924 _2413 Position (kb) 2549 2550 2551 2552Strain fitness (log2 ratio) -2 -1 0 1at 2549.300 kb on - strandat 2549.312 kb on + strandat 2549.600 kb on + strand, within Dshi_2412at 2549.906 kb on + strand, within Dshi_2412at 2549.982 kb on + strand, within Dshi_2412at 2550.039 kb on - strand, within Dshi_2412at 2550.078 kb on - strand, within Dshi_2412at 2550.209 kb on + strand, within Dshi_2412at 2550.209 kb on + strand, within Dshi_2412at 2550.453 kb on + strand, within Dshi_2412at 2551.394 kb on - strandat 2551.874 kb on + strand, within Dshi_2413at 2551.880 kb on + strand, within Dshi_2413at 2551.880 kb on + strand, within Dshi_2413at 2551.918 kb on + strand, within Dshi_2413

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,549,300 - -1.5
2,549,312 + +1.0
2,549,600 + Dshi_2412 0.11 -1.1
2,549,906 + Dshi_2412 0.29 -0.7
2,549,982 + Dshi_2412 0.34 -1.1
2,550,039 - Dshi_2412 0.37 +0.9
2,550,078 - Dshi_2412 0.39 -1.5
2,550,209 + Dshi_2412 0.47 -1.3
2,550,209 + Dshi_2412 0.47 -0.5
2,550,453 + Dshi_2412 0.62 -1.7
2,551,394 - -0.7
2,551,874 + Dshi_2413 0.37 -1.9
2,551,880 + Dshi_2413 0.37 -1.5
2,551,880 + Dshi_2413 0.37 +0.8
2,551,918 + Dshi_2413 0.39 -0.6

Or see this region's nucleotide sequence