Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1882

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1881 and Dshi_1882 overlap by 4 nucleotidesDshi_1882 and Dshi_1883 are separated by 219 nucleotides Dshi_1881: Dshi_1881 - hypothetical protein (RefSeq), at 1,958,592 to 1,959,968 _1881 Dshi_1882: Dshi_1882 - GCN5-related N-acetyltransferase (RefSeq), at 1,959,965 to 1,960,423 _1882 Dshi_1883: Dshi_1883 - AAA ATPase central domain protein (RefSeq), at 1,960,643 to 1,961,485 _1883 Position (kb) 1959 1960 1961Strain fitness (log2 ratio) -1 0 1at 1959.228 kb on - strand, within Dshi_1881at 1959.286 kb on - strand, within Dshi_1881at 1959.287 kb on + strand, within Dshi_1881at 1959.922 kb on + strandat 1960.183 kb on - strand, within Dshi_1882at 1960.305 kb on + strand, within Dshi_1882at 1960.305 kb on + strand, within Dshi_1882at 1960.313 kb on - strand, within Dshi_1882at 1960.376 kb on + strand, within Dshi_1882at 1960.416 kb on - strandat 1960.476 kb on + strandat 1960.504 kb on - strandat 1960.800 kb on - strand, within Dshi_1883at 1960.878 kb on + strand, within Dshi_1883at 1961.341 kb on - strand, within Dshi_1883at 1961.362 kb on + strand, within Dshi_1883at 1961.414 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
1,959,228 - Dshi_1881 0.46 +0.1
1,959,286 - Dshi_1881 0.50 -0.0
1,959,287 + Dshi_1881 0.50 +0.9
1,959,922 + -0.8
1,960,183 - Dshi_1882 0.47 -0.5
1,960,305 + Dshi_1882 0.74 +0.2
1,960,305 + Dshi_1882 0.74 -0.1
1,960,313 - Dshi_1882 0.76 +0.0
1,960,376 + Dshi_1882 0.90 -0.7
1,960,416 - +0.1
1,960,476 + +1.3
1,960,504 - -0.4
1,960,800 - Dshi_1883 0.19 -0.5
1,960,878 + Dshi_1883 0.28 +0.6
1,961,341 - Dshi_1883 0.83 -1.7
1,961,362 + Dshi_1883 0.85 +0.0
1,961,414 + -0.7

Or see this region's nucleotide sequence