Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0918

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0917 and Dshi_0918 are separated by 250 nucleotidesDshi_0918 and Dshi_0919 overlap by 4 nucleotidesDshi_0919 and Dshi_0920 overlap by 4 nucleotides Dshi_0917: Dshi_0917 - acriflavin resistance protein (RefSeq), at 939,057 to 942,221 _0917 Dshi_0918: Dshi_0918 - Auxin Efflux Carrier (RefSeq), at 942,472 to 943,404 _0918 Dshi_0919: Dshi_0919 - beta-lactamase domain protein (RefSeq), at 943,401 to 944,207 _0919 Dshi_0920: Dshi_0920 - hydrolase, TatD family (RefSeq), at 944,204 to 945,013 _0920 Position (kb) 942 943 944Strain fitness (log2 ratio) -2 -1 0 1at 941.524 kb on + strand, within Dshi_0917at 941.532 kb on - strand, within Dshi_0917at 941.671 kb on + strand, within Dshi_0917at 941.795 kb on + strand, within Dshi_0917at 941.800 kb on + strand, within Dshi_0917at 941.945 kb on + strandat 942.188 kb on - strandat 942.310 kb on + strandat 942.318 kb on - strandat 942.425 kb on - strandat 942.478 kb on - strandat 942.580 kb on + strand, within Dshi_0918at 942.702 kb on + strand, within Dshi_0918at 942.761 kb on + strand, within Dshi_0918at 942.833 kb on + strand, within Dshi_0918at 942.901 kb on + strand, within Dshi_0918at 942.984 kb on + strand, within Dshi_0918at 943.055 kb on + strand, within Dshi_0918at 943.227 kb on - strand, within Dshi_0918at 943.227 kb on - strand, within Dshi_0918at 943.282 kb on + strand, within Dshi_0918at 943.559 kb on + strand, within Dshi_0919at 943.560 kb on + strand, within Dshi_0919at 943.560 kb on + strand, within Dshi_0919at 943.634 kb on - strand, within Dshi_0919at 943.656 kb on - strand, within Dshi_0919at 943.802 kb on - strand, within Dshi_0919at 943.866 kb on + strand, within Dshi_0919at 943.968 kb on + strand, within Dshi_0919at 943.976 kb on - strand, within Dshi_0919at 943.977 kb on - strand, within Dshi_0919at 943.989 kb on - strand, within Dshi_0919at 944.043 kb on - strand, within Dshi_0919

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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941,524 + Dshi_0917 0.78 +0.5
941,532 - Dshi_0917 0.78 +0.4
941,671 + Dshi_0917 0.83 +0.5
941,795 + Dshi_0917 0.87 -0.4
941,800 + Dshi_0917 0.87 -0.4
941,945 + +0.3
942,188 - -1.2
942,310 + -1.1
942,318 - +0.3
942,425 - +0.0
942,478 - +1.0
942,580 + Dshi_0918 0.12 -0.9
942,702 + Dshi_0918 0.25 -0.0
942,761 + Dshi_0918 0.31 -2.0
942,833 + Dshi_0918 0.39 -0.1
942,901 + Dshi_0918 0.46 -1.2
942,984 + Dshi_0918 0.55 -0.5
943,055 + Dshi_0918 0.62 -1.5
943,227 - Dshi_0918 0.81 -0.0
943,227 - Dshi_0918 0.81 +0.9
943,282 + Dshi_0918 0.87 -0.6
943,559 + Dshi_0919 0.20 -0.5
943,560 + Dshi_0919 0.20 -2.4
943,560 + Dshi_0919 0.20 -0.0
943,634 - Dshi_0919 0.29 -1.0
943,656 - Dshi_0919 0.32 -1.3
943,802 - Dshi_0919 0.50 +0.7
943,866 + Dshi_0919 0.58 -1.5
943,968 + Dshi_0919 0.70 -0.8
943,976 - Dshi_0919 0.71 -0.5
943,977 - Dshi_0919 0.71 -1.0
943,989 - Dshi_0919 0.73 -1.3
944,043 - Dshi_0919 0.80 -1.0

Or see this region's nucleotide sequence