Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0918
Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
941,524 | + | Dshi_0917 | 0.78 | +0.5 | |
941,532 | - | Dshi_0917 | 0.78 | +0.4 | |
941,671 | + | Dshi_0917 | 0.83 | +0.5 | |
941,795 | + | Dshi_0917 | 0.87 | -0.4 | |
941,800 | + | Dshi_0917 | 0.87 | -0.4 | |
941,945 | + | +0.3 | |||
942,188 | - | -1.2 | |||
942,310 | + | -1.1 | |||
942,318 | - | +0.3 | |||
942,425 | - | +0.0 | |||
942,478 | - | +1.0 | |||
942,580 | + | Dshi_0918 | 0.12 | -0.9 | |
942,702 | + | Dshi_0918 | 0.25 | -0.0 | |
942,761 | + | Dshi_0918 | 0.31 | -2.0 | |
942,833 | + | Dshi_0918 | 0.39 | -0.1 | |
942,901 | + | Dshi_0918 | 0.46 | -1.2 | |
942,984 | + | Dshi_0918 | 0.55 | -0.5 | |
943,055 | + | Dshi_0918 | 0.62 | -1.5 | |
943,227 | - | Dshi_0918 | 0.81 | -0.0 | |
943,227 | - | Dshi_0918 | 0.81 | +0.9 | |
943,282 | + | Dshi_0918 | 0.87 | -0.6 | |
943,559 | + | Dshi_0919 | 0.20 | -0.5 | |
943,560 | + | Dshi_0919 | 0.20 | -2.4 | |
943,560 | + | Dshi_0919 | 0.20 | -0.0 | |
943,634 | - | Dshi_0919 | 0.29 | -1.0 | |
943,656 | - | Dshi_0919 | 0.32 | -1.3 | |
943,802 | - | Dshi_0919 | 0.50 | +0.7 | |
943,866 | + | Dshi_0919 | 0.58 | -1.5 | |
943,968 | + | Dshi_0919 | 0.70 | -0.8 | |
943,976 | - | Dshi_0919 | 0.71 | -0.5 | |
943,977 | - | Dshi_0919 | 0.71 | -1.0 | |
943,989 | - | Dshi_0919 | 0.73 | -1.3 | |
944,043 | - | Dshi_0919 | 0.80 | -1.0 |
Or see this region's nucleotide sequence