Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0884 and Dshi_0885 overlap by 4 nucleotides Dshi_0885 and Dshi_0886 are separated by 3 nucleotides Dshi_0886 and Dshi_0887 are separated by 199 nucleotides
Dshi_0884: Dshi_0884 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 899,031 to 900,113
_0884
Dshi_0885: Dshi_0885 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 900,110 to 901,078
_0885
Dshi_0886: Dshi_0886 - transcriptional regulator, IclR family (RefSeq), at 901,082 to 901,924
_0886
Dshi_0887: Dshi_0887 - Serine--glyoxylate transaminase (RefSeq), at 902,124 to 903,314
_0887
Position (kb)
901
902 Strain fitness (log2 ratio)
-2
-1
0
1 at 900.147 kb on + strand at 900.201 kb on - strand at 900.224 kb on - strand, within Dshi_0885 at 900.392 kb on - strand, within Dshi_0885 at 900.428 kb on - strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.650 kb on + strand, within Dshi_0885 at 900.772 kb on - strand, within Dshi_0885 at 900.831 kb on + strand, within Dshi_0885 at 900.839 kb on - strand, within Dshi_0885 at 900.875 kb on - strand, within Dshi_0885 at 900.967 kb on - strand, within Dshi_0885 at 901.056 kb on + strand at 901.262 kb on + strand, within Dshi_0886 at 901.270 kb on - strand, within Dshi_0886 at 901.347 kb on - strand, within Dshi_0886 at 901.347 kb on - strand, within Dshi_0886 at 901.349 kb on + strand, within Dshi_0886 at 901.358 kb on - strand, within Dshi_0886 at 901.373 kb on + strand, within Dshi_0886 at 901.513 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.514 kb on - strand, within Dshi_0886 at 901.638 kb on - strand, within Dshi_0886 at 901.819 kb on + strand, within Dshi_0886 at 901.829 kb on - strand, within Dshi_0886 at 901.843 kb on + strand at 901.846 kb on - strand at 901.846 kb on - strand at 901.892 kb on + strand at 901.905 kb on + strand at 902.106 kb on + strand at 902.112 kb on - strand at 902.276 kb on - strand, within Dshi_0887 at 902.283 kb on - strand, within Dshi_0887 at 902.410 kb on + strand, within Dshi_0887 at 902.503 kb on - strand, within Dshi_0887 at 902.503 kb on - strand, within Dshi_0887 at 902.509 kb on - strand, within Dshi_0887 at 902.605 kb on - strand, within Dshi_0887 at 902.633 kb on - strand, within Dshi_0887 at 902.639 kb on - strand, within Dshi_0887 at 902.891 kb on + strand, within Dshi_0887
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 900,147 + -1.2 900,201 - +0.8 900,224 - Dshi_0885 0.12 -0.3 900,392 - Dshi_0885 0.29 -1.1 900,428 - Dshi_0885 0.33 -0.2 900,501 + Dshi_0885 0.40 +0.8 900,501 + Dshi_0885 0.40 -1.6 900,650 + Dshi_0885 0.56 -0.5 900,772 - Dshi_0885 0.68 -2.1 900,831 + Dshi_0885 0.74 -0.0 900,839 - Dshi_0885 0.75 -0.5 900,875 - Dshi_0885 0.79 -0.3 900,967 - Dshi_0885 0.88 -0.8 901,056 + -0.2 901,262 + Dshi_0886 0.21 +0.3 901,270 - Dshi_0886 0.22 -1.0 901,347 - Dshi_0886 0.31 -0.5 901,347 - Dshi_0886 0.31 -1.2 901,349 + Dshi_0886 0.32 -2.3 901,358 - Dshi_0886 0.33 -0.2 901,373 + Dshi_0886 0.35 -0.6 901,513 - Dshi_0886 0.51 -1.2 901,514 - Dshi_0886 0.51 +1.2 901,514 - Dshi_0886 0.51 +0.3 901,514 - Dshi_0886 0.51 -0.6 901,514 - Dshi_0886 0.51 -1.2 901,638 - Dshi_0886 0.66 -0.4 901,819 + Dshi_0886 0.87 +0.1 901,829 - Dshi_0886 0.89 +0.1 901,843 + -0.6 901,846 - +0.4 901,846 - +1.0 901,892 + -0.7 901,905 + -1.6 902,106 + +0.4 902,112 - +1.1 902,276 - Dshi_0887 0.13 -0.5 902,283 - Dshi_0887 0.13 +0.5 902,410 + Dshi_0887 0.24 +0.1 902,503 - Dshi_0887 0.32 -0.2 902,503 - Dshi_0887 0.32 -0.1 902,509 - Dshi_0887 0.32 -0.5 902,605 - Dshi_0887 0.40 +0.5 902,633 - Dshi_0887 0.43 -0.1 902,639 - Dshi_0887 0.43 +0.0 902,891 + Dshi_0887 0.64 +0.2
Or see this region's nucleotide sequence