Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0823 and Dshi_0824 overlap by 4 nucleotides Dshi_0824 and Dshi_0825 are separated by 135 nucleotides
Dshi_0823: Dshi_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 827,784 to 829,175
_0823
Dshi_0824: Dshi_0824 - histidine kinase (RefSeq), at 829,172 to 830,701
_0824
Dshi_0825: Dshi_0825 - AMP-dependent synthetase and ligase (RefSeq), at 830,837 to 832,729
_0825
Position (kb) 829
830
831 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 828.257 kb on + strand, within Dshi_0823 at 828.288 kb on - strand, within Dshi_0823 at 828.432 kb on - strand, within Dshi_0823 at 828.432 kb on - strand, within Dshi_0823 at 828.578 kb on + strand, within Dshi_0823 at 828.607 kb on - strand, within Dshi_0823 at 828.607 kb on - strand, within Dshi_0823 at 828.621 kb on + strand, within Dshi_0823 at 828.638 kb on - strand, within Dshi_0823 at 828.687 kb on + strand, within Dshi_0823 at 828.687 kb on - strand, within Dshi_0823 at 828.694 kb on + strand, within Dshi_0823 at 828.697 kb on - strand, within Dshi_0823 at 828.790 kb on - strand, within Dshi_0823 at 828.831 kb on - strand, within Dshi_0823 at 828.936 kb on - strand, within Dshi_0823 at 828.938 kb on + strand, within Dshi_0823 at 828.983 kb on + strand, within Dshi_0823 at 829.070 kb on - strand at 829.088 kb on + strand at 829.179 kb on + strand at 829.281 kb on - strand at 829.357 kb on + strand, within Dshi_0824 at 829.436 kb on - strand, within Dshi_0824 at 829.598 kb on + strand, within Dshi_0824 at 829.618 kb on + strand, within Dshi_0824 at 829.638 kb on + strand, within Dshi_0824 at 829.719 kb on - strand, within Dshi_0824 at 829.808 kb on + strand, within Dshi_0824 at 829.824 kb on - strand, within Dshi_0824 at 829.921 kb on + strand, within Dshi_0824 at 829.939 kb on + strand, within Dshi_0824 at 829.939 kb on + strand, within Dshi_0824 at 829.952 kb on + strand, within Dshi_0824 at 829.960 kb on - strand, within Dshi_0824 at 829.960 kb on - strand, within Dshi_0824 at 829.970 kb on - strand, within Dshi_0824 at 830.026 kb on - strand, within Dshi_0824 at 830.261 kb on - strand, within Dshi_0824 at 830.261 kb on - strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.442 kb on - strand, within Dshi_0824 at 830.707 kb on + strand at 830.766 kb on + strand at 830.824 kb on - strand at 830.964 kb on + strand at 830.979 kb on + strand at 831.062 kb on - strand, within Dshi_0825 at 831.138 kb on - strand, within Dshi_0825 at 831.280 kb on + strand, within Dshi_0825 at 831.410 kb on - strand, within Dshi_0825 at 831.452 kb on - strand, within Dshi_0825 at 831.511 kb on + strand, within Dshi_0825 at 831.546 kb on - strand, within Dshi_0825 at 831.596 kb on + strand, within Dshi_0825 at 831.692 kb on + strand, within Dshi_0825
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 828,257 + Dshi_0823 0.34 +0.3 828,288 - Dshi_0823 0.36 -0.0 828,432 - Dshi_0823 0.47 +0.7 828,432 - Dshi_0823 0.47 -0.1 828,578 + Dshi_0823 0.57 -0.3 828,607 - Dshi_0823 0.59 -0.3 828,607 - Dshi_0823 0.59 -0.5 828,621 + Dshi_0823 0.60 -1.2 828,638 - Dshi_0823 0.61 +0.6 828,687 + Dshi_0823 0.65 +0.6 828,687 - Dshi_0823 0.65 -1.2 828,694 + Dshi_0823 0.65 +0.0 828,697 - Dshi_0823 0.66 +0.1 828,790 - Dshi_0823 0.72 +0.7 828,831 - Dshi_0823 0.75 +0.1 828,936 - Dshi_0823 0.83 +0.5 828,938 + Dshi_0823 0.83 +0.4 828,983 + Dshi_0823 0.86 +0.1 829,070 - -0.1 829,088 + -0.0 829,179 + -2.6 829,281 - +0.4 829,357 + Dshi_0824 0.12 -1.4 829,436 - Dshi_0824 0.17 +1.6 829,598 + Dshi_0824 0.28 +0.9 829,618 + Dshi_0824 0.29 +0.5 829,638 + Dshi_0824 0.30 -0.1 829,719 - Dshi_0824 0.36 +0.2 829,808 + Dshi_0824 0.42 +0.2 829,824 - Dshi_0824 0.43 -0.5 829,921 + Dshi_0824 0.49 -0.4 829,939 + Dshi_0824 0.50 -0.2 829,939 + Dshi_0824 0.50 -0.2 829,952 + Dshi_0824 0.51 -0.2 829,960 - Dshi_0824 0.52 +0.6 829,960 - Dshi_0824 0.52 -0.2 829,970 - Dshi_0824 0.52 -1.6 830,026 - Dshi_0824 0.56 +0.5 830,261 - Dshi_0824 0.71 -0.2 830,261 - Dshi_0824 0.71 -3.8 830,434 + Dshi_0824 0.82 -0.0 830,434 + Dshi_0824 0.82 -1.2 830,434 + Dshi_0824 0.82 -0.6 830,442 - Dshi_0824 0.83 -0.0 830,707 + +0.1 830,766 + +1.3 830,824 - -0.5 830,964 + -0.1 830,979 + +0.1 831,062 - Dshi_0825 0.12 +0.7 831,138 - Dshi_0825 0.16 -1.4 831,280 + Dshi_0825 0.23 -1.2 831,410 - Dshi_0825 0.30 -0.4 831,452 - Dshi_0825 0.32 -0.1 831,511 + Dshi_0825 0.36 +0.7 831,546 - Dshi_0825 0.37 -0.6 831,596 + Dshi_0825 0.40 -1.7 831,692 + Dshi_0825 0.45 -0.5
Or see this region's nucleotide sequence