Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0480 and Dshi_0481 are separated by 51 nucleotides Dshi_0481 and Dshi_0482 are separated by 467 nucleotides
Dshi_0480: Dshi_0480 - hypothetical protein (RefSeq), at 464,801 to 465,967
_0480
Dshi_0481: Dshi_0481 - hypothetical protein (RefSeq), at 466,019 to 466,831
_0481
Dshi_0482: Dshi_0482 - hypothetical protein (RefSeq), at 467,299 to 467,784
_0482
Position (kb) 466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 465.024 kb on - strand, within Dshi_0480 at 465.034 kb on + strand, within Dshi_0480 at 465.042 kb on + strand, within Dshi_0480 at 465.070 kb on - strand, within Dshi_0480 at 465.082 kb on + strand, within Dshi_0480 at 465.099 kb on - strand, within Dshi_0480 at 465.100 kb on - strand, within Dshi_0480 at 465.123 kb on - strand, within Dshi_0480 at 465.194 kb on + strand, within Dshi_0480 at 465.195 kb on + strand, within Dshi_0480 at 465.217 kb on + strand, within Dshi_0480 at 465.217 kb on + strand, within Dshi_0480 at 465.253 kb on - strand, within Dshi_0480 at 465.265 kb on + strand, within Dshi_0480 at 465.272 kb on - strand, within Dshi_0480 at 465.276 kb on + strand, within Dshi_0480 at 465.341 kb on + strand, within Dshi_0480 at 465.376 kb on + strand, within Dshi_0480 at 465.376 kb on + strand, within Dshi_0480 at 465.376 kb on + strand, within Dshi_0480 at 465.416 kb on - strand, within Dshi_0480 at 465.416 kb on - strand, within Dshi_0480 at 465.484 kb on + strand, within Dshi_0480 at 465.509 kb on + strand, within Dshi_0480 at 465.519 kb on + strand, within Dshi_0480 at 465.519 kb on + strand, within Dshi_0480 at 465.519 kb on + strand, within Dshi_0480 at 465.519 kb on + strand, within Dshi_0480 at 465.521 kb on - strand, within Dshi_0480 at 465.524 kb on + strand, within Dshi_0480 at 465.524 kb on + strand, within Dshi_0480 at 465.527 kb on - strand, within Dshi_0480 at 465.527 kb on - strand, within Dshi_0480 at 465.536 kb on + strand, within Dshi_0480 at 465.601 kb on + strand, within Dshi_0480 at 465.623 kb on - strand, within Dshi_0480 at 465.699 kb on + strand, within Dshi_0480 at 465.716 kb on + strand, within Dshi_0480 at 465.773 kb on + strand, within Dshi_0480 at 465.833 kb on - strand, within Dshi_0480 at 465.843 kb on - strand, within Dshi_0480 at 465.856 kb on + strand at 465.856 kb on + strand at 465.857 kb on - strand at 465.861 kb on + strand at 465.861 kb on + strand at 465.861 kb on + strand at 465.862 kb on - strand at 465.864 kb on - strand at 465.869 kb on - strand at 465.869 kb on - strand at 465.875 kb on + strand at 465.880 kb on + strand at 465.882 kb on + strand at 465.900 kb on + strand at 465.910 kb on + strand at 465.943 kb on + strand at 465.951 kb on - strand at 465.983 kb on + strand at 465.983 kb on + strand at 466.010 kb on + strand at 466.012 kb on + strand at 466.020 kb on - strand at 466.077 kb on - strand at 466.090 kb on + strand at 466.090 kb on + strand at 466.098 kb on - strand at 466.098 kb on - strand at 466.237 kb on - strand, within Dshi_0481 at 466.241 kb on + strand, within Dshi_0481 at 466.241 kb on + strand, within Dshi_0481 at 466.246 kb on - strand, within Dshi_0481 at 466.246 kb on - strand, within Dshi_0481 at 466.246 kb on - strand, within Dshi_0481 at 466.261 kb on + strand, within Dshi_0481 at 466.264 kb on - strand, within Dshi_0481 at 466.297 kb on + strand, within Dshi_0481 at 466.297 kb on + strand, within Dshi_0481 at 466.331 kb on + strand, within Dshi_0481 at 466.334 kb on - strand, within Dshi_0481 at 466.351 kb on - strand, within Dshi_0481 at 466.433 kb on - strand, within Dshi_0481 at 466.486 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.637 kb on + strand, within Dshi_0481 at 466.637 kb on + strand, within Dshi_0481 at 466.674 kb on - strand, within Dshi_0481 at 466.702 kb on + strand, within Dshi_0481 at 466.702 kb on + strand, within Dshi_0481 at 466.703 kb on - strand, within Dshi_0481 at 466.710 kb on - strand, within Dshi_0481 at 466.710 kb on - strand, within Dshi_0481 at 466.731 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.751 kb on - strand at 466.751 kb on - strand at 466.751 kb on - strand at 466.751 kb on - strand at 466.763 kb on - strand at 466.763 kb on - strand at 466.786 kb on + strand at 466.799 kb on - strand at 466.799 kb on - strand at 466.819 kb on - strand at 466.854 kb on + strand at 466.856 kb on + strand at 466.864 kb on - strand at 466.891 kb on + strand at 466.894 kb on - strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.971 kb on - strand at 466.971 kb on - strand at 466.971 kb on - strand at 466.986 kb on + strand at 467.017 kb on + strand at 467.025 kb on - strand at 467.025 kb on - strand at 467.045 kb on + strand at 467.059 kb on + strand at 467.159 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.177 kb on - strand at 467.177 kb on - strand at 467.211 kb on - strand at 467.217 kb on - strand at 467.252 kb on + strand at 467.252 kb on + strand at 467.253 kb on + strand at 467.253 kb on + strand at 467.271 kb on + strand at 467.271 kb on + strand at 467.286 kb on + strand at 467.294 kb on - strand at 467.334 kb on - strand at 467.346 kb on + strand at 467.351 kb on + strand, within Dshi_0482 at 467.354 kb on - strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.361 kb on + strand, within Dshi_0482 at 467.364 kb on - strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.403 kb on + strand, within Dshi_0482 at 467.411 kb on - strand, within Dshi_0482 at 467.411 kb on - strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.452 kb on + strand, within Dshi_0482 at 467.453 kb on - strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.490 kb on - strand, within Dshi_0482 at 467.495 kb on + strand, within Dshi_0482 at 467.495 kb on + strand, within Dshi_0482 at 467.500 kb on + strand, within Dshi_0482 at 467.587 kb on - strand, within Dshi_0482 at 467.589 kb on + strand, within Dshi_0482 at 467.589 kb on + strand, within Dshi_0482 at 467.597 kb on + strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.603 kb on + strand, within Dshi_0482 at 467.634 kb on - strand, within Dshi_0482 at 467.636 kb on + strand, within Dshi_0482 at 467.659 kb on - strand, within Dshi_0482 at 467.661 kb on + strand, within Dshi_0482 at 467.670 kb on - strand, within Dshi_0482 at 467.704 kb on + strand, within Dshi_0482 at 467.704 kb on + strand, within Dshi_0482 at 467.709 kb on + strand, within Dshi_0482 at 467.711 kb on - strand, within Dshi_0482 at 467.711 kb on - strand, within Dshi_0482 at 467.717 kb on - strand, within Dshi_0482 at 467.723 kb on + strand, within Dshi_0482 at 467.723 kb on + strand, within Dshi_0482 at 467.750 kb on + strand at 467.758 kb on - strand at 467.758 kb on - strand at 467.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 465,024 - Dshi_0480 0.19 -0.5 465,034 + Dshi_0480 0.20 +0.2 465,042 + Dshi_0480 0.21 +0.9 465,070 - Dshi_0480 0.23 -0.2 465,082 + Dshi_0480 0.24 -0.4 465,099 - Dshi_0480 0.26 +0.3 465,100 - Dshi_0480 0.26 -0.4 465,123 - Dshi_0480 0.28 -0.1 465,194 + Dshi_0480 0.34 +0.4 465,195 + Dshi_0480 0.34 +0.1 465,217 + Dshi_0480 0.36 -0.1 465,217 + Dshi_0480 0.36 -0.3 465,253 - Dshi_0480 0.39 -0.7 465,265 + Dshi_0480 0.40 +1.2 465,272 - Dshi_0480 0.40 -0.5 465,276 + Dshi_0480 0.41 -0.4 465,341 + Dshi_0480 0.46 -2.1 465,376 + Dshi_0480 0.49 -0.3 465,376 + Dshi_0480 0.49 +0.5 465,376 + Dshi_0480 0.49 +0.0 465,416 - Dshi_0480 0.53 +0.3 465,416 - Dshi_0480 0.53 -0.1 465,484 + Dshi_0480 0.59 -0.1 465,509 + Dshi_0480 0.61 +0.7 465,519 + Dshi_0480 0.62 +0.9 465,519 + Dshi_0480 0.62 +0.4 465,519 + Dshi_0480 0.62 +0.3 465,519 + Dshi_0480 0.62 -2.8 465,521 - Dshi_0480 0.62 -0.3 465,524 + Dshi_0480 0.62 -0.8 465,524 + Dshi_0480 0.62 +0.3 465,527 - Dshi_0480 0.62 +1.1 465,527 - Dshi_0480 0.62 -0.1 465,536 + Dshi_0480 0.63 -0.0 465,601 + Dshi_0480 0.69 +0.4 465,623 - Dshi_0480 0.70 +0.1 465,699 + Dshi_0480 0.77 -0.5 465,716 + Dshi_0480 0.78 +0.7 465,773 + Dshi_0480 0.83 -1.1 465,833 - Dshi_0480 0.88 -0.6 465,843 - Dshi_0480 0.89 +0.4 465,856 + -0.7 465,856 + +0.9 465,857 - -1.0 465,861 + -0.5 465,861 + -0.1 465,861 + +0.1 465,862 - +0.4 465,864 - -0.6 465,869 - +0.2 465,869 - -0.3 465,875 + -0.1 465,880 + +0.4 465,882 + +0.0 465,900 + -0.2 465,910 + -1.5 465,943 + +0.1 465,951 - -1.4 465,983 + +1.1 465,983 + -0.5 466,010 + +2.1 466,012 + -1.5 466,020 - -1.2 466,077 - -0.0 466,090 + +1.0 466,090 + +0.4 466,098 - +0.3 466,098 - -1.5 466,237 - Dshi_0481 0.27 -1.1 466,241 + Dshi_0481 0.27 -0.2 466,241 + Dshi_0481 0.27 -0.4 466,246 - Dshi_0481 0.28 +0.1 466,246 - Dshi_0481 0.28 -0.8 466,246 - Dshi_0481 0.28 -1.4 466,261 + Dshi_0481 0.30 +0.2 466,264 - Dshi_0481 0.30 -0.2 466,297 + Dshi_0481 0.34 +0.4 466,297 + Dshi_0481 0.34 -0.6 466,331 + Dshi_0481 0.38 +0.2 466,334 - Dshi_0481 0.39 -0.4 466,351 - Dshi_0481 0.41 -1.2 466,433 - Dshi_0481 0.51 +0.3 466,486 - Dshi_0481 0.57 -0.4 466,583 - Dshi_0481 0.69 +0.4 466,583 - Dshi_0481 0.69 -2.2 466,583 - Dshi_0481 0.69 +0.7 466,637 + Dshi_0481 0.76 -0.1 466,637 + Dshi_0481 0.76 -0.6 466,674 - Dshi_0481 0.81 -1.9 466,702 + Dshi_0481 0.84 -1.9 466,702 + Dshi_0481 0.84 -0.9 466,703 - Dshi_0481 0.84 -0.3 466,710 - Dshi_0481 0.85 -0.7 466,710 - Dshi_0481 0.85 -1.2 466,731 + Dshi_0481 0.88 -0.2 466,743 + Dshi_0481 0.89 -0.2 466,743 + Dshi_0481 0.89 -0.3 466,743 + Dshi_0481 0.89 +0.1 466,743 + Dshi_0481 0.89 -0.4 466,743 + Dshi_0481 0.89 +0.8 466,743 + Dshi_0481 0.89 -1.0 466,743 + Dshi_0481 0.89 +0.2 466,743 + Dshi_0481 0.89 -0.8 466,743 + Dshi_0481 0.89 +0.2 466,743 + Dshi_0481 0.89 -0.5 466,751 - -0.0 466,751 - +1.2 466,751 - -0.4 466,751 - -0.9 466,763 - -1.0 466,763 - -1.5 466,786 + -0.1 466,799 - +0.3 466,799 - -1.0 466,819 - +0.5 466,854 + -0.8 466,856 + -0.3 466,864 - +0.1 466,891 + -0.1 466,894 - +0.5 466,963 + -0.5 466,963 + +0.4 466,963 + -0.7 466,963 + -0.4 466,971 - -0.1 466,971 - +0.6 466,971 - +0.5 466,986 + +0.6 467,017 + +0.7 467,025 - -0.4 467,025 - +0.1 467,045 + -0.9 467,059 + -1.3 467,159 + +0.1 467,169 + +0.1 467,169 + +1.6 467,169 + +0.1 467,169 + -0.1 467,169 + -0.6 467,177 - -0.5 467,177 - -0.7 467,211 - -0.3 467,217 - -0.0 467,252 + +0.0 467,252 + -1.0 467,253 + -1.0 467,253 + -0.4 467,271 + +0.9 467,271 + -0.7 467,286 + +1.1 467,294 - -0.7 467,334 - +0.1 467,346 + -0.5 467,351 + Dshi_0482 0.11 -0.2 467,354 - Dshi_0482 0.11 -0.3 467,356 + Dshi_0482 0.12 -0.8 467,356 + Dshi_0482 0.12 -0.9 467,356 + Dshi_0482 0.12 -0.2 467,361 + Dshi_0482 0.13 -0.3 467,364 - Dshi_0482 0.13 -0.5 467,393 + Dshi_0482 0.19 +0.8 467,393 + Dshi_0482 0.19 +0.2 467,393 + Dshi_0482 0.19 +0.4 467,393 + Dshi_0482 0.19 -0.2 467,393 + Dshi_0482 0.19 -0.3 467,401 - Dshi_0482 0.21 +0.3 467,401 - Dshi_0482 0.21 -0.5 467,401 - Dshi_0482 0.21 -1.7 467,401 - Dshi_0482 0.21 +0.4 467,401 - Dshi_0482 0.21 -1.2 467,401 - Dshi_0482 0.21 -0.4 467,403 + Dshi_0482 0.21 -0.7 467,411 - Dshi_0482 0.23 -0.6 467,411 - Dshi_0482 0.23 -0.1 467,427 + Dshi_0482 0.26 -0.4 467,427 + Dshi_0482 0.26 -0.0 467,427 + Dshi_0482 0.26 -0.4 467,435 - Dshi_0482 0.28 +0.4 467,435 - Dshi_0482 0.28 -0.6 467,435 - Dshi_0482 0.28 +0.2 467,452 + Dshi_0482 0.31 -0.3 467,453 - Dshi_0482 0.32 -1.2 467,482 + Dshi_0482 0.38 -0.3 467,482 + Dshi_0482 0.38 -0.2 467,482 + Dshi_0482 0.38 -2.0 467,482 + Dshi_0482 0.38 -0.1 467,490 - Dshi_0482 0.39 -1.5 467,495 + Dshi_0482 0.40 -1.8 467,495 + Dshi_0482 0.40 -1.0 467,500 + Dshi_0482 0.41 -0.4 467,587 - Dshi_0482 0.59 +0.9 467,589 + Dshi_0482 0.60 -0.7 467,589 + Dshi_0482 0.60 +0.5 467,597 + Dshi_0482 0.61 -0.8 467,597 - Dshi_0482 0.61 +0.1 467,597 - Dshi_0482 0.61 +0.3 467,597 - Dshi_0482 0.61 -0.4 467,603 + Dshi_0482 0.63 +1.1 467,634 - Dshi_0482 0.69 -1.8 467,636 + Dshi_0482 0.69 +0.1 467,659 - Dshi_0482 0.74 -1.1 467,661 + Dshi_0482 0.74 -0.1 467,670 - Dshi_0482 0.76 -0.8 467,704 + Dshi_0482 0.83 -0.6 467,704 + Dshi_0482 0.83 +0.2 467,709 + Dshi_0482 0.84 -1.2 467,711 - Dshi_0482 0.85 -0.2 467,711 - Dshi_0482 0.85 +0.9 467,717 - Dshi_0482 0.86 -0.2 467,723 + Dshi_0482 0.87 -0.1 467,723 + Dshi_0482 0.87 -0.3 467,750 + +0.5 467,758 - +0.0 467,758 - -0.1 467,820 - +0.6
Or see this region's nucleotide sequence