Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0320 and Dshi_0321 are separated by 15 nucleotides Dshi_0321 and Dshi_0322 are separated by 43 nucleotides Dshi_0322 and Dshi_0323 overlap by 4 nucleotides
Dshi_0320: Dshi_0320 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 308,666 to 309,964
_0320
Dshi_0321: Dshi_0321 - ABC transporter related (RefSeq), at 309,980 to 310,756
_0321
Dshi_0322: Dshi_0322 - putative phosphohistidine phosphatase, SixA (RefSeq), at 310,800 to 311,300
_0322
Dshi_0323: Dshi_0323 - hypothetical protein (RefSeq), at 311,297 to 311,920
_0323
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.112 kb on + strand, within Dshi_0320 at 309.141 kb on - strand, within Dshi_0320 at 309.418 kb on + strand, within Dshi_0320 at 309.487 kb on - strand, within Dshi_0320 at 309.542 kb on + strand, within Dshi_0320 at 309.760 kb on + strand, within Dshi_0320 at 309.786 kb on - strand, within Dshi_0320 at 309.858 kb on + strand at 309.930 kb on + strand at 309.938 kb on - strand at 310.000 kb on - strand at 310.014 kb on + strand at 310.101 kb on + strand, within Dshi_0321 at 310.156 kb on + strand, within Dshi_0321 at 310.254 kb on + strand, within Dshi_0321 at 310.254 kb on + strand, within Dshi_0321 at 310.257 kb on - strand, within Dshi_0321 at 310.548 kb on - strand, within Dshi_0321 at 311.516 kb on + strand, within Dshi_0323 at 311.523 kb on + strand, within Dshi_0323
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 309,010 - Dshi_0320 0.26 -0.7 309,010 - Dshi_0320 0.26 +0.8 309,010 - Dshi_0320 0.26 +1.0 309,010 - Dshi_0320 0.26 -0.0 309,010 - Dshi_0320 0.26 -0.5 309,112 + Dshi_0320 0.34 +0.2 309,141 - Dshi_0320 0.37 -0.4 309,418 + Dshi_0320 0.58 -1.8 309,487 - Dshi_0320 0.63 -0.2 309,542 + Dshi_0320 0.67 -0.1 309,760 + Dshi_0320 0.84 +1.9 309,786 - Dshi_0320 0.86 +0.2 309,858 + -0.6 309,930 + -0.3 309,938 - +0.9 310,000 - +0.5 310,014 + -0.2 310,101 + Dshi_0321 0.16 -0.2 310,156 + Dshi_0321 0.23 -0.3 310,254 + Dshi_0321 0.35 -1.1 310,254 + Dshi_0321 0.35 +0.0 310,257 - Dshi_0321 0.36 -1.5 310,548 - Dshi_0321 0.73 -0.6 311,516 + Dshi_0323 0.35 +0.8 311,523 + Dshi_0323 0.36 -0.6
Or see this region's nucleotide sequence