Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0259

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0257 and Dshi_0258 are separated by 194 nucleotidesDshi_0258 and Dshi_0259 are separated by 201 nucleotidesDshi_0259 and Dshi_0260 are separated by 103 nucleotidesDshi_0260 and Dshi_0261 are separated by 1 nucleotides Dshi_0257: Dshi_0257 - peptidase S8 and S53 subtilisin kexin sedolisin (RefSeq), at 254,727 to 256,076 _0257 Dshi_0258: Dshi_0258 - preprotein translocase, SecE subunit (RefSeq), at 256,271 to 256,471 _0258 Dshi_0259: Dshi_0259 - NusG antitermination factor (RefSeq), at 256,673 to 257,206 _0259 Dshi_0260: Dshi_0260 - ribosomal protein L11 (RefSeq), at 257,310 to 257,735 _0260 Dshi_0261: Dshi_0261 - ribosomal protein L1 (RefSeq), at 257,737 to 258,435 _0261 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2 3at 255.771 kb on - strand, within Dshi_0257at 255.785 kb on + strand, within Dshi_0257at 255.838 kb on - strand, within Dshi_0257at 255.849 kb on - strand, within Dshi_0257at 255.877 kb on + strand, within Dshi_0257at 255.890 kb on + strand, within Dshi_0257at 255.914 kb on - strand, within Dshi_0257at 255.952 kb on + strandat 255.960 kb on - strandat 255.960 kb on - strandat 255.960 kb on - strandat 255.976 kb on - strandat 256.021 kb on + strandat 256.058 kb on + strandat 256.058 kb on - strandat 256.058 kb on - strandat 256.066 kb on + strandat 256.069 kb on - strandat 256.120 kb on + strandat 256.125 kb on + strandat 256.125 kb on + strandat 256.133 kb on - strandat 256.137 kb on + strandat 256.138 kb on - strandat 256.166 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.183 kb on + strandat 256.191 kb on - strandat 256.191 kb on - strandat 256.191 kb on - strandat 256.191 kb on - strandat 256.191 kb on - strandat 256.192 kb on - strandat 256.470 kb on + strandat 256.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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255,771 - Dshi_0257 0.77 -0.7
255,785 + Dshi_0257 0.78 -1.4
255,838 - Dshi_0257 0.82 +0.2
255,849 - Dshi_0257 0.83 -0.3
255,877 + Dshi_0257 0.85 -0.4
255,890 + Dshi_0257 0.86 +1.4
255,914 - Dshi_0257 0.88 +0.5
255,952 + -0.5
255,960 - -0.5
255,960 - +0.8
255,960 - -1.2
255,976 - -1.2
256,021 + -0.2
256,058 + +0.2
256,058 - -0.4
256,058 - -0.2
256,066 + +0.3
256,069 - -0.0
256,120 + -0.7
256,125 + +0.5
256,125 + -0.0
256,133 - +2.8
256,137 + +0.0
256,138 - -0.6
256,166 + +1.1
256,183 + +0.0
256,183 + -0.9
256,183 + -0.5
256,183 + -0.5
256,183 + -0.0
256,183 + -0.5
256,183 + -2.2
256,183 + -1.1
256,191 - -1.2
256,191 - +1.4
256,191 - -0.7
256,191 - +0.8
256,191 - -0.5
256,192 - -2.7
256,470 + +1.4
256,510 - -0.2

Or see this region's nucleotide sequence