Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0175 and Dshi_0176 are separated by 123 nucleotides Dshi_0176 and Dshi_0177 are separated by 60 nucleotides Dshi_0177 and Dshi_0178 are separated by 3 nucleotides
Dshi_0175: Dshi_0175 - precorrin-3B C17-methyltransferase (RefSeq), at 178,678 to 180,483
_0175
Dshi_0176: Dshi_0176 - precorrin-4 C11-methyltransferase (RefSeq), at 180,607 to 181,383
_0176
Dshi_0177: Dshi_0177 - hypothetical protein (RefSeq), at 181,444 to 181,797
_0177
Dshi_0178: Dshi_0178 - aminotransferase class I and II (RefSeq), at 181,801 to 182,973
_0178
Position (kb) 181
182 Strain fitness (log2 ratio) -1
0
1
2
3 at 180.583 kb on - strand at 180.583 kb on - strand at 181.416 kb on + strand at 181.696 kb on - strand, within Dshi_0177 at 181.908 kb on + strand at 181.916 kb on - strand at 181.979 kb on - strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.351 kb on - strand, within Dshi_0178 at 182.361 kb on - strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.530 kb on + strand, within Dshi_0178 at 182.539 kb on - strand at 182.539 kb on - strand, within Dshi_0178 at 182.563 kb on + strand, within Dshi_0178 at 182.609 kb on + strand, within Dshi_0178 at 182.668 kb on + strand, within Dshi_0178 at 182.730 kb on - strand, within Dshi_0178 at 182.770 kb on + strand, within Dshi_0178
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 180,583 - -1.1 180,583 - -1.3 181,416 + -1.0 181,696 - Dshi_0177 0.71 +1.6 181,908 + +1.1 181,916 - +1.4 181,979 - Dshi_0178 0.15 +0.6 182,002 + Dshi_0178 0.17 -0.7 182,002 + Dshi_0178 0.17 +0.8 182,351 - Dshi_0178 0.47 +0.7 182,361 - Dshi_0178 0.48 +0.8 182,438 + Dshi_0178 0.54 +1.0 182,438 + Dshi_0178 0.54 +0.6 182,530 + Dshi_0178 0.62 -0.6 182,539 - +2.9 182,539 - Dshi_0178 0.63 +1.3 182,563 + Dshi_0178 0.65 +1.4 182,609 + Dshi_0178 0.69 +1.5 182,668 + Dshi_0178 0.74 +1.8 182,730 - Dshi_0178 0.79 +1.3 182,770 + Dshi_0178 0.83 +1.2
Or see this region's nucleotide sequence