Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0033 and Dshi_0034 overlap by 4 nucleotides Dshi_0034 and Dshi_0035 are separated by 26 nucleotides Dshi_0035 and Dshi_0036 are separated by 73 nucleotides
Dshi_0033: Dshi_0033 - protein of unknown function DUF343 (RefSeq), at 36,716 to 36,907
_0033
Dshi_0034: Dshi_0034 - peptidase S16 lon domain protein (RefSeq), at 36,904 to 37,551
_0034
Dshi_0035: Dshi_0035 - Thioredoxin domain (RefSeq), at 37,578 to 38,489
_0035
Dshi_0036: Dshi_0036 - exodeoxyribonuclease III Xth (RefSeq), at 38,563 to 39,351
_0036
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 36.701 kb on - strand at 36.789 kb on - strand, within Dshi_0033 at 36.854 kb on - strand, within Dshi_0033 at 36.962 kb on - strand at 37.078 kb on - strand, within Dshi_0034 at 37.097 kb on - strand, within Dshi_0034 at 37.212 kb on - strand, within Dshi_0034 at 37.243 kb on - strand, within Dshi_0034 at 37.364 kb on + strand, within Dshi_0034 at 37.366 kb on + strand, within Dshi_0034 at 37.724 kb on + strand, within Dshi_0035 at 37.780 kb on - strand, within Dshi_0035 at 37.790 kb on - strand, within Dshi_0035 at 37.939 kb on + strand, within Dshi_0035 at 38.019 kb on - strand, within Dshi_0035 at 38.240 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.415 kb on - strand at 38.541 kb on + strand at 38.677 kb on + strand, within Dshi_0036 at 38.794 kb on - strand, within Dshi_0036 at 38.846 kb on + strand, within Dshi_0036 at 39.021 kb on - strand, within Dshi_0036 at 39.083 kb on + strand, within Dshi_0036 at 39.128 kb on - strand, within Dshi_0036 at 39.162 kb on - strand, within Dshi_0036 at 39.176 kb on - strand, within Dshi_0036 at 39.295 kb on - strand at 39.317 kb on + strand at 39.325 kb on - strand at 39.341 kb on + strand at 39.371 kb on - strand at 39.410 kb on + strand at 39.424 kb on - strand at 39.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 36,701 - -0.5 36,789 - Dshi_0033 0.38 -1.6 36,854 - Dshi_0033 0.72 -1.5 36,962 - -0.4 37,078 - Dshi_0034 0.27 +0.1 37,097 - Dshi_0034 0.30 -0.2 37,212 - Dshi_0034 0.48 -0.8 37,243 - Dshi_0034 0.52 +1.6 37,364 + Dshi_0034 0.71 -0.9 37,366 + Dshi_0034 0.71 -0.1 37,724 + Dshi_0035 0.16 +0.3 37,780 - Dshi_0035 0.22 -1.5 37,790 - Dshi_0035 0.23 +0.0 37,939 + Dshi_0035 0.40 -1.3 38,019 - Dshi_0035 0.48 -0.8 38,240 - Dshi_0035 0.73 +0.8 38,255 - Dshi_0035 0.74 -0.6 38,255 - Dshi_0035 0.74 -1.1 38,255 - Dshi_0035 0.74 -0.5 38,415 - -1.1 38,541 + -0.6 38,677 + Dshi_0036 0.14 +1.0 38,794 - Dshi_0036 0.29 -0.6 38,846 + Dshi_0036 0.36 -1.3 39,021 - Dshi_0036 0.58 -2.8 39,083 + Dshi_0036 0.66 -0.3 39,128 - Dshi_0036 0.72 -1.8 39,162 - Dshi_0036 0.76 -0.8 39,176 - Dshi_0036 0.78 -0.0 39,295 - -1.3 39,317 + +0.9 39,325 - -0.8 39,341 + +0.1 39,371 - -0.4 39,410 + -0.5 39,424 - +0.0 39,482 + -0.4
Or see this region's nucleotide sequence