Strain Fitness in Marinobacter adhaerens HP15 around HP15_724

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_723 and HP15_724 are separated by 116 nucleotidesHP15_724 and HP15_725 overlap by 4 nucleotides HP15_723: HP15_723 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data), at 731,411 to 733,600 _723 HP15_724: HP15_724 - periplasmic sensor signal transduction histidine kinase, at 733,717 to 735,531 _724 HP15_725: HP15_725 - two component, sigma54 specific, transcriptional regulator, Fis family, at 735,528 to 736,880 _725 Position (kb) 733 734 735 736Strain fitness (log2 ratio) -1 0 1 2at 732.861 kb on + strand, within HP15_723at 732.923 kb on + strand, within HP15_723at 732.990 kb on + strand, within HP15_723at 732.998 kb on - strand, within HP15_723at 733.064 kb on + strand, within HP15_723at 733.077 kb on - strand, within HP15_723at 733.136 kb on - strand, within HP15_723at 733.318 kb on - strand, within HP15_723at 733.379 kb on - strand, within HP15_723at 733.397 kb on - strandat 733.460 kb on - strandat 733.492 kb on + strandat 733.514 kb on + strandat 733.546 kb on - strandat 733.713 kb on + strandat 733.766 kb on - strandat 733.817 kb on + strandat 733.817 kb on + strandat 733.820 kb on - strandat 733.825 kb on - strandat 733.987 kb on + strand, within HP15_724at 733.995 kb on - strand, within HP15_724at 734.228 kb on + strand, within HP15_724at 734.500 kb on - strand, within HP15_724at 734.502 kb on - strand, within HP15_724at 734.512 kb on - strand, within HP15_724at 734.563 kb on + strand, within HP15_724at 734.579 kb on + strand, within HP15_724at 734.647 kb on + strand, within HP15_724at 734.657 kb on + strand, within HP15_724at 734.657 kb on + strand, within HP15_724at 734.657 kb on + strand, within HP15_724at 734.695 kb on - strand, within HP15_724at 734.754 kb on - strand, within HP15_724at 734.975 kb on + strand, within HP15_724at 735.081 kb on - strand, within HP15_724at 735.169 kb on - strand, within HP15_724at 735.210 kb on + strand, within HP15_724at 735.218 kb on - strand, within HP15_724at 735.404 kb on + strandat 735.412 kb on - strandat 735.470 kb on + strandat 735.480 kb on + strandat 735.511 kb on - strandat 735.584 kb on + strandat 735.757 kb on - strand, within HP15_725at 735.757 kb on - strand, within HP15_725at 735.787 kb on - strand, within HP15_725at 736.103 kb on - strand, within HP15_725at 736.256 kb on + strand, within HP15_725at 736.282 kb on - strand, within HP15_725at 736.283 kb on - strand, within HP15_725at 736.490 kb on + strand, within HP15_725

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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732,861 + HP15_723 0.66 +1.5
732,923 + HP15_723 0.69 +1.3
732,990 + HP15_723 0.72 +1.6
732,998 - HP15_723 0.72 +0.9
733,064 + HP15_723 0.75 +1.2
733,077 - HP15_723 0.76 +1.6
733,136 - HP15_723 0.79 +0.7
733,318 - HP15_723 0.87 +1.4
733,379 - HP15_723 0.90 +0.5
733,397 - +1.8
733,460 - +2.0
733,492 + +1.4
733,514 + +1.5
733,546 - +1.0
733,713 + +0.2
733,766 - +1.2
733,817 + +1.0
733,817 + +0.2
733,820 - +1.3
733,825 - +2.1
733,987 + HP15_724 0.15 +1.8
733,995 - HP15_724 0.15 +1.7
734,228 + HP15_724 0.28 +1.8
734,500 - HP15_724 0.43 +1.7
734,502 - HP15_724 0.43 +1.4
734,512 - HP15_724 0.44 +1.7
734,563 + HP15_724 0.47 +2.6
734,579 + HP15_724 0.47 +1.2
734,647 + HP15_724 0.51 +1.3
734,657 + HP15_724 0.52 +1.1
734,657 + HP15_724 0.52 +1.3
734,657 + HP15_724 0.52 +1.0
734,695 - HP15_724 0.54 +2.5
734,754 - HP15_724 0.57 +2.0
734,975 + HP15_724 0.69 +1.1
735,081 - HP15_724 0.75 +1.3
735,169 - HP15_724 0.80 +1.4
735,210 + HP15_724 0.82 +1.3
735,218 - HP15_724 0.83 +1.7
735,404 + +0.7
735,412 - +2.2
735,470 + +1.3
735,480 + +1.7
735,511 - +1.6
735,584 + +1.7
735,757 - HP15_725 0.17 +0.1
735,757 - HP15_725 0.17 +2.0
735,787 - HP15_725 0.19 +1.4
736,103 - HP15_725 0.42 +1.3
736,256 + HP15_725 0.54 +1.6
736,282 - HP15_725 0.56 +1.1
736,283 - HP15_725 0.56 +2.0
736,490 + HP15_725 0.71 +1.5

Or see this region's nucleotide sequence