Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_695 and HP15_696 overlap by 7 nucleotides HP15_696 and HP15_697 overlap by 1 nucleotides HP15_697 and HP15_698 overlap by 1 nucleotides HP15_698 and HP15_699 are separated by 59 nucleotides
HP15_695: HP15_695 - conserved hypothetical protein, at 707,459 to 707,650
_695
HP15_696: HP15_696 - conserved hypothetical protein, at 707,644 to 707,871
_696
HP15_697: HP15_697 - conserved hypothetical protein, at 707,871 to 708,542
_697
HP15_698: HP15_698 - conserved hypothetical protein, at 708,542 to 708,838
_698
HP15_699: HP15_699 - conserved hypothetical protein, at 708,898 to 710,031
_699
Position (kb) 708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 707.545 kb on - strand, within HP15_695 at 707.580 kb on - strand, within HP15_695 at 707.592 kb on - strand, within HP15_695 at 707.643 kb on - strand at 707.726 kb on + strand, within HP15_696 at 707.779 kb on - strand, within HP15_696 at 707.834 kb on - strand, within HP15_696 at 707.853 kb on - strand at 707.871 kb on - strand at 707.873 kb on - strand at 707.979 kb on - strand, within HP15_697 at 708.037 kb on - strand, within HP15_697 at 708.116 kb on - strand, within HP15_697 at 708.165 kb on + strand, within HP15_697 at 708.241 kb on + strand, within HP15_697 at 708.402 kb on - strand, within HP15_697 at 708.434 kb on - strand, within HP15_697 at 708.489 kb on - strand at 708.825 kb on - strand at 708.827 kb on + strand at 708.827 kb on + strand at 708.827 kb on + strand at 708.835 kb on - strand at 708.835 kb on - strand at 708.947 kb on - strand at 708.947 kb on - strand at 708.947 kb on - strand at 708.949 kb on + strand at 709.085 kb on + strand, within HP15_699 at 709.170 kb on + strand, within HP15_699 at 709.197 kb on + strand, within HP15_699 at 709.205 kb on - strand, within HP15_699 at 709.409 kb on - strand, within HP15_699 at 709.495 kb on - strand, within HP15_699 at 709.505 kb on + strand, within HP15_699 at 709.513 kb on - strand, within HP15_699 at 709.513 kb on - strand, within HP15_699 at 709.520 kb on + strand, within HP15_699 at 709.590 kb on + strand, within HP15_699 at 709.636 kb on - strand, within HP15_699 at 709.639 kb on + strand, within HP15_699 at 709.639 kb on + strand, within HP15_699 at 709.663 kb on + strand, within HP15_699 at 709.793 kb on - strand, within HP15_699
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 707,545 - HP15_695 0.45 -2.0 707,580 - HP15_695 0.63 +0.0 707,592 - HP15_695 0.69 -0.0 707,643 - -0.5 707,726 + HP15_696 0.36 +0.4 707,779 - HP15_696 0.59 -2.7 707,834 - HP15_696 0.83 -0.2 707,853 - +0.5 707,871 - +0.1 707,873 - -0.1 707,979 - HP15_697 0.16 +3.5 708,037 - HP15_697 0.25 +0.5 708,116 - HP15_697 0.36 +0.7 708,165 + HP15_697 0.44 +0.7 708,241 + HP15_697 0.55 +0.9 708,402 - HP15_697 0.79 +0.9 708,434 - HP15_697 0.84 -0.3 708,489 - -2.2 708,825 - -0.8 708,827 + -0.0 708,827 + -0.0 708,827 + -1.0 708,835 - -0.1 708,835 - -0.2 708,947 - +0.2 708,947 - -0.6 708,947 - +0.1 708,949 + -0.3 709,085 + HP15_699 0.16 +0.1 709,170 + HP15_699 0.24 -0.4 709,197 + HP15_699 0.26 +1.7 709,205 - HP15_699 0.27 -0.4 709,409 - HP15_699 0.45 +0.4 709,495 - HP15_699 0.53 +0.3 709,505 + HP15_699 0.54 +0.6 709,513 - HP15_699 0.54 +0.6 709,513 - HP15_699 0.54 +0.5 709,520 + HP15_699 0.55 +0.1 709,590 + HP15_699 0.61 -1.9 709,636 - HP15_699 0.65 -0.6 709,639 + HP15_699 0.65 +1.9 709,639 + HP15_699 0.65 -1.0 709,663 + HP15_699 0.67 +0.5 709,793 - HP15_699 0.79 +0.2
Or see this region's nucleotide sequence