Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04290 and PGA1_c04300 are separated by 23 nucleotides PGA1_c04300 and PGA1_c04310 overlap by 19 nucleotides PGA1_c04310 and PGA1_c04320 are separated by 52 nucleotides
PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162
_c04290
PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731
_c04300
PGA1_c04310: PGA1_c04310 - Protein of unknown function (DUF1045)., at 416,713 to 417,396
_c04310
PGA1_c04320: PGA1_c04320 - protein PhnM, at 417,449 to 418,591
_c04320
Position (kb) 416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.767 kb on + strand, within PGA1_c04290 at 415.778 kb on - strand, within PGA1_c04290 at 415.816 kb on - strand, within PGA1_c04290 at 415.852 kb on + strand, within PGA1_c04290 at 415.860 kb on - strand, within PGA1_c04290 at 415.869 kb on + strand, within PGA1_c04290 at 416.002 kb on + strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.062 kb on + strand, within PGA1_c04290 at 416.108 kb on + strand at 416.108 kb on + strand at 416.108 kb on + strand at 416.186 kb on - strand at 416.238 kb on + strand at 416.242 kb on + strand, within PGA1_c04300 at 416.248 kb on - strand, within PGA1_c04300 at 416.304 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.364 kb on + strand, within PGA1_c04300 at 416.372 kb on - strand, within PGA1_c04300 at 416.382 kb on - strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.392 kb on - strand, within PGA1_c04300 at 416.398 kb on - strand, within PGA1_c04300 at 416.442 kb on + strand, within PGA1_c04300 at 416.445 kb on - strand, within PGA1_c04300 at 416.565 kb on + strand, within PGA1_c04300 at 416.567 kb on + strand, within PGA1_c04300 at 416.573 kb on - strand, within PGA1_c04300 at 416.607 kb on + strand, within PGA1_c04300 at 416.696 kb on + strand at 417.046 kb on + strand, within PGA1_c04310 at 417.054 kb on - strand, within PGA1_c04310 at 417.065 kb on - strand, within PGA1_c04310 at 417.225 kb on + strand, within PGA1_c04310 at 417.390 kb on - strand at 417.402 kb on + strand at 417.405 kb on + strand at 417.434 kb on - strand at 417.458 kb on + strand at 417.458 kb on + strand at 417.458 kb on + strand at 417.480 kb on + strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.552 kb on - strand at 417.576 kb on + strand, within PGA1_c04320 at 417.576 kb on + strand, within PGA1_c04320 at 417.681 kb on - strand, within PGA1_c04320 at 417.735 kb on - strand, within PGA1_c04320 at 417.768 kb on - strand, within PGA1_c04320 at 417.773 kb on - strand, within PGA1_c04320 at 417.890 kb on - strand, within PGA1_c04320 at 417.944 kb on - strand, within PGA1_c04320 at 418.015 kb on - strand, within PGA1_c04320 at 418.031 kb on - strand, within PGA1_c04320 at 418.136 kb on + strand, within PGA1_c04320 at 418.146 kb on + strand, within PGA1_c04320 at 418.218 kb on + strand, within PGA1_c04320 at 418.226 kb on - strand, within PGA1_c04320 at 418.254 kb on + strand, within PGA1_c04320 at 418.254 kb on + strand, within PGA1_c04320 at 418.262 kb on - strand, within PGA1_c04320 at 418.262 kb on - strand, within PGA1_c04320 at 418.275 kb on + strand, within PGA1_c04320 at 418.275 kb on + strand, within PGA1_c04320 at 418.285 kb on + strand, within PGA1_c04320 at 418.293 kb on - strand, within PGA1_c04320 at 418.374 kb on - strand, within PGA1_c04320 at 418.387 kb on - strand, within PGA1_c04320 at 418.387 kb on - strand, within PGA1_c04320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 415,767 + PGA1_c04290 0.42 -0.5 415,778 - PGA1_c04290 0.44 -1.4 415,816 - PGA1_c04290 0.49 +0.1 415,852 + PGA1_c04290 0.55 +0.6 415,860 - PGA1_c04290 0.56 -0.0 415,869 + PGA1_c04290 0.57 -1.5 416,002 + PGA1_c04290 0.76 +0.6 416,036 - PGA1_c04290 0.81 +0.3 416,036 - PGA1_c04290 0.81 -2.1 416,062 + PGA1_c04290 0.85 -0.0 416,108 + -2.0 416,108 + -1.8 416,108 + +1.8 416,186 - +1.5 416,238 + -0.9 416,242 + PGA1_c04300 0.10 +2.0 416,248 - PGA1_c04300 0.11 +0.2 416,304 + PGA1_c04300 0.22 -1.4 416,347 + PGA1_c04300 0.29 +0.6 416,347 + PGA1_c04300 0.29 +0.9 416,355 - PGA1_c04300 0.31 +1.7 416,355 - PGA1_c04300 0.31 +0.9 416,364 + PGA1_c04300 0.33 +0.3 416,372 - PGA1_c04300 0.34 -0.3 416,382 - PGA1_c04300 0.36 +0.8 416,384 + PGA1_c04300 0.36 -1.8 416,384 + PGA1_c04300 0.36 +0.8 416,384 + PGA1_c04300 0.36 +0.3 416,384 + PGA1_c04300 0.36 +0.6 416,384 + PGA1_c04300 0.36 +0.1 416,390 + PGA1_c04300 0.37 +0.7 416,390 + PGA1_c04300 0.37 +1.3 416,390 + PGA1_c04300 0.37 -1.7 416,390 + PGA1_c04300 0.37 -0.4 416,390 + PGA1_c04300 0.37 -0.0 416,392 - PGA1_c04300 0.38 -0.7 416,398 - PGA1_c04300 0.39 +0.6 416,442 + PGA1_c04300 0.47 -0.6 416,445 - PGA1_c04300 0.47 -0.9 416,565 + PGA1_c04300 0.69 +1.2 416,567 + PGA1_c04300 0.70 +0.5 416,573 - PGA1_c04300 0.71 +1.2 416,607 + PGA1_c04300 0.77 -1.8 416,696 + -0.4 417,046 + PGA1_c04310 0.49 -2.0 417,054 - PGA1_c04310 0.50 -1.0 417,065 - PGA1_c04310 0.51 -3.4 417,225 + PGA1_c04310 0.75 -2.0 417,390 - -0.6 417,402 + -1.8 417,405 + -2.5 417,434 - -1.8 417,458 + +0.8 417,458 + -0.5 417,458 + -1.1 417,480 + -1.6 417,488 - -2.2 417,488 - +0.4 417,488 - +0.2 417,488 - +2.1 417,488 - -0.0 417,488 - +0.3 417,488 - +0.2 417,552 - -0.1 417,576 + PGA1_c04320 0.11 +1.1 417,576 + PGA1_c04320 0.11 -2.2 417,681 - PGA1_c04320 0.20 +0.6 417,735 - PGA1_c04320 0.25 +0.7 417,768 - PGA1_c04320 0.28 +0.5 417,773 - PGA1_c04320 0.28 +1.2 417,890 - PGA1_c04320 0.39 -0.0 417,944 - PGA1_c04320 0.43 +0.6 418,015 - PGA1_c04320 0.50 +0.6 418,031 - PGA1_c04320 0.51 +1.3 418,136 + PGA1_c04320 0.60 +0.1 418,146 + PGA1_c04320 0.61 -0.4 418,218 + PGA1_c04320 0.67 +1.3 418,226 - PGA1_c04320 0.68 +0.6 418,254 + PGA1_c04320 0.70 +0.6 418,254 + PGA1_c04320 0.70 -0.4 418,262 - PGA1_c04320 0.71 -1.5 418,262 - PGA1_c04320 0.71 +0.7 418,275 + PGA1_c04320 0.72 -0.5 418,275 + PGA1_c04320 0.72 -1.0 418,285 + PGA1_c04320 0.73 -0.5 418,293 - PGA1_c04320 0.74 +1.4 418,374 - PGA1_c04320 0.81 +0.2 418,387 - PGA1_c04320 0.82 -1.6 418,387 - PGA1_c04320 0.82 -0.2
Or see this region's nucleotide sequence