Strain Fitness in Marinobacter adhaerens HP15 around HP15_4074

Experiment: m.b. pH10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4072 and HP15_4073 are separated by 4 nucleotidesHP15_4073 and HP15_4074 are separated by 38 nucleotidesHP15_4074 and HP15_4075 are separated by 47 nucleotidesHP15_4075 and HP15_4076 are separated by 108 nucleotides HP15_4072: HP15_4072 - diguanylate cyclase with PAS/PAC sensor, at 4,304,969 to 4,307,230 _4072 HP15_4073: HP15_4073 - universal stress protein family protein, at 4,307,235 to 4,307,675 _4073 HP15_4074: HP15_4074 - C4-dicarboxylate transport system (permease large protein), at 4,307,714 to 4,308,985 _4074 HP15_4075: HP15_4075 - TRAP dicarboxylate transporter, DctQ subunit, at 4,309,033 to 4,309,626 _4075 HP15_4076: HP15_4076 - TRAP dicarboxylate transporter, DctP subunit, at 4,309,735 to 4,310,859 _4076 Position (kb) 4307 4308 4309Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4306.806 kb on + strand, within HP15_4072at 4307.018 kb on - strandat 4307.036 kb on + strandat 4307.054 kb on + strandat 4307.105 kb on + strandat 4307.107 kb on + strandat 4307.285 kb on - strand, within HP15_4073at 4307.290 kb on + strand, within HP15_4073at 4307.306 kb on + strand, within HP15_4073at 4307.345 kb on + strand, within HP15_4073at 4307.345 kb on + strand, within HP15_4073at 4307.345 kb on + strand, within HP15_4073at 4307.353 kb on + strand, within HP15_4073at 4307.361 kb on - strand, within HP15_4073at 4307.654 kb on - strandat 4307.684 kb on + strandat 4307.932 kb on - strand, within HP15_4074at 4307.944 kb on - strand, within HP15_4074at 4308.124 kb on - strand, within HP15_4074at 4308.222 kb on + strand, within HP15_4074at 4308.260 kb on - strand, within HP15_4074at 4308.290 kb on + strand, within HP15_4074at 4308.495 kb on - strand, within HP15_4074at 4308.659 kb on - strand, within HP15_4074at 4308.661 kb on + strand, within HP15_4074at 4308.666 kb on + strand, within HP15_4074at 4308.688 kb on + strand, within HP15_4074at 4308.688 kb on + strand, within HP15_4074at 4308.690 kb on + strand, within HP15_4074at 4308.696 kb on - strand, within HP15_4074at 4308.723 kb on + strand, within HP15_4074at 4308.929 kb on - strandat 4309.001 kb on + strandat 4309.037 kb on - strandat 4309.225 kb on - strand, within HP15_4075at 4309.274 kb on + strand, within HP15_4075at 4309.312 kb on + strand, within HP15_4075at 4309.523 kb on + strand, within HP15_4075at 4309.530 kb on - strand, within HP15_4075at 4309.632 kb on - strandat 4309.741 kb on + strandat 4309.741 kb on + strandat 4309.763 kb on + strandat 4309.763 kb on + strandat 4309.763 kb on + strandat 4309.763 kb on + strandat 4309.782 kb on - strandat 4309.816 kb on + strandat 4309.850 kb on + strand, within HP15_4076at 4309.952 kb on - strand, within HP15_4076at 4309.978 kb on + strand, within HP15_4076

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
remove
4,306,806 + HP15_4072 0.81 +0.1
4,307,018 - +3.9
4,307,036 + +0.6
4,307,054 + +0.7
4,307,105 + -1.9
4,307,107 + -0.2
4,307,285 - HP15_4073 0.11 -0.5
4,307,290 + HP15_4073 0.12 +0.0
4,307,306 + HP15_4073 0.16 +0.4
4,307,345 + HP15_4073 0.25 +0.6
4,307,345 + HP15_4073 0.25 -0.6
4,307,345 + HP15_4073 0.25 +0.1
4,307,353 + HP15_4073 0.27 +0.9
4,307,361 - HP15_4073 0.29 +0.5
4,307,654 - -0.4
4,307,684 + +0.1
4,307,932 - HP15_4074 0.17 +0.9
4,307,944 - HP15_4074 0.18 -0.0
4,308,124 - HP15_4074 0.32 +0.5
4,308,222 + HP15_4074 0.40 +1.8
4,308,260 - HP15_4074 0.43 +0.2
4,308,290 + HP15_4074 0.45 +0.1
4,308,495 - HP15_4074 0.61 +1.0
4,308,659 - HP15_4074 0.74 +0.3
4,308,661 + HP15_4074 0.74 -0.4
4,308,666 + HP15_4074 0.75 -0.4
4,308,688 + HP15_4074 0.77 +1.2
4,308,688 + HP15_4074 0.77 -0.2
4,308,690 + HP15_4074 0.77 -0.2
4,308,696 - HP15_4074 0.77 +0.4
4,308,723 + HP15_4074 0.79 -0.3
4,308,929 - -0.2
4,309,001 + -0.5
4,309,037 - +0.2
4,309,225 - HP15_4075 0.32 +1.8
4,309,274 + HP15_4075 0.41 -0.7
4,309,312 + HP15_4075 0.47 +1.3
4,309,523 + HP15_4075 0.82 +1.2
4,309,530 - HP15_4075 0.84 -0.0
4,309,632 - -0.3
4,309,741 + -0.4
4,309,741 + -0.2
4,309,763 + -0.3
4,309,763 + +2.7
4,309,763 + +0.1
4,309,763 + +0.5
4,309,782 - +0.3
4,309,816 + +0.1
4,309,850 + HP15_4076 0.10 +0.7
4,309,952 - HP15_4076 0.19 +0.8
4,309,978 + HP15_4076 0.22 -1.4

Or see this region's nucleotide sequence