Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4072 and HP15_4073 are separated by 4 nucleotides HP15_4073 and HP15_4074 are separated by 38 nucleotides HP15_4074 and HP15_4075 are separated by 47 nucleotides HP15_4075 and HP15_4076 are separated by 108 nucleotides
HP15_4072: HP15_4072 - diguanylate cyclase with PAS/PAC sensor, at 4,304,969 to 4,307,230
_4072
HP15_4073: HP15_4073 - universal stress protein family protein, at 4,307,235 to 4,307,675
_4073
HP15_4074: HP15_4074 - C4-dicarboxylate transport system (permease large protein), at 4,307,714 to 4,308,985
_4074
HP15_4075: HP15_4075 - TRAP dicarboxylate transporter, DctQ subunit, at 4,309,033 to 4,309,626
_4075
HP15_4076: HP15_4076 - TRAP dicarboxylate transporter, DctP subunit, at 4,309,735 to 4,310,859
_4076
Position (kb)
4307
4308
4309 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4306.806 kb on + strand, within HP15_4072 at 4307.018 kb on - strand at 4307.036 kb on + strand at 4307.054 kb on + strand at 4307.105 kb on + strand at 4307.107 kb on + strand at 4307.285 kb on - strand, within HP15_4073 at 4307.290 kb on + strand, within HP15_4073 at 4307.306 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.353 kb on + strand, within HP15_4073 at 4307.361 kb on - strand, within HP15_4073 at 4307.654 kb on - strand at 4307.684 kb on + strand at 4307.932 kb on - strand, within HP15_4074 at 4307.944 kb on - strand, within HP15_4074 at 4308.124 kb on - strand, within HP15_4074 at 4308.222 kb on + strand, within HP15_4074 at 4308.260 kb on - strand, within HP15_4074 at 4308.290 kb on + strand, within HP15_4074 at 4308.495 kb on - strand, within HP15_4074 at 4308.659 kb on - strand, within HP15_4074 at 4308.661 kb on + strand, within HP15_4074 at 4308.666 kb on + strand, within HP15_4074 at 4308.688 kb on + strand, within HP15_4074 at 4308.688 kb on + strand, within HP15_4074 at 4308.690 kb on + strand, within HP15_4074 at 4308.696 kb on - strand, within HP15_4074 at 4308.723 kb on + strand, within HP15_4074 at 4308.929 kb on - strand at 4309.001 kb on + strand at 4309.037 kb on - strand at 4309.225 kb on - strand, within HP15_4075 at 4309.274 kb on + strand, within HP15_4075 at 4309.312 kb on + strand, within HP15_4075 at 4309.523 kb on + strand, within HP15_4075 at 4309.530 kb on - strand, within HP15_4075 at 4309.632 kb on - strand at 4309.741 kb on + strand at 4309.741 kb on + strand at 4309.763 kb on + strand at 4309.763 kb on + strand at 4309.763 kb on + strand at 4309.763 kb on + strand at 4309.782 kb on - strand at 4309.816 kb on + strand at 4309.850 kb on + strand, within HP15_4076 at 4309.952 kb on - strand, within HP15_4076 at 4309.978 kb on + strand, within HP15_4076
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 4,306,806 + HP15_4072 0.81 +0.1 4,307,018 - +3.9 4,307,036 + +0.6 4,307,054 + +0.7 4,307,105 + -1.9 4,307,107 + -0.2 4,307,285 - HP15_4073 0.11 -0.5 4,307,290 + HP15_4073 0.12 +0.0 4,307,306 + HP15_4073 0.16 +0.4 4,307,345 + HP15_4073 0.25 +0.6 4,307,345 + HP15_4073 0.25 -0.6 4,307,345 + HP15_4073 0.25 +0.1 4,307,353 + HP15_4073 0.27 +0.9 4,307,361 - HP15_4073 0.29 +0.5 4,307,654 - -0.4 4,307,684 + +0.1 4,307,932 - HP15_4074 0.17 +0.9 4,307,944 - HP15_4074 0.18 -0.0 4,308,124 - HP15_4074 0.32 +0.5 4,308,222 + HP15_4074 0.40 +1.8 4,308,260 - HP15_4074 0.43 +0.2 4,308,290 + HP15_4074 0.45 +0.1 4,308,495 - HP15_4074 0.61 +1.0 4,308,659 - HP15_4074 0.74 +0.3 4,308,661 + HP15_4074 0.74 -0.4 4,308,666 + HP15_4074 0.75 -0.4 4,308,688 + HP15_4074 0.77 +1.2 4,308,688 + HP15_4074 0.77 -0.2 4,308,690 + HP15_4074 0.77 -0.2 4,308,696 - HP15_4074 0.77 +0.4 4,308,723 + HP15_4074 0.79 -0.3 4,308,929 - -0.2 4,309,001 + -0.5 4,309,037 - +0.2 4,309,225 - HP15_4075 0.32 +1.8 4,309,274 + HP15_4075 0.41 -0.7 4,309,312 + HP15_4075 0.47 +1.3 4,309,523 + HP15_4075 0.82 +1.2 4,309,530 - HP15_4075 0.84 -0.0 4,309,632 - -0.3 4,309,741 + -0.4 4,309,741 + -0.2 4,309,763 + -0.3 4,309,763 + +2.7 4,309,763 + +0.1 4,309,763 + +0.5 4,309,782 - +0.3 4,309,816 + +0.1 4,309,850 + HP15_4076 0.10 +0.7 4,309,952 - HP15_4076 0.19 +0.8 4,309,978 + HP15_4076 0.22 -1.4
Or see this region's nucleotide sequence