Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3272

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3271 and Psest_3272 overlap by 1 nucleotidesPsest_3272 and Psest_3273 are separated by 107 nucleotidesPsest_3273 and Psest_3274 overlap by 4 nucleotides Psest_3271: Psest_3271 - Putative lipoprotein, at 3,440,251 to 3,442,053 _3271 Psest_3272: Psest_3272 - TIGR00252 family protein, at 3,442,053 to 3,442,415 _3272 Psest_3273: Psest_3273 - Phosphoheptose isomerase, at 3,442,523 to 3,443,116 _3273 Psest_3274: Psest_3274 - Predicted periplasmic or secreted lipoprotein, at 3,443,113 to 3,443,688 _3274 Position (kb) 3442 3443Strain fitness (log2 ratio) -1 0 1 2at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.195 kb on + strand, within Psest_3272at 3442.198 kb on + strand, within Psest_3272at 3442.198 kb on + strand, within Psest_3272

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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3,442,195 + Psest_3272 0.39 -0.3
3,442,195 + Psest_3272 0.39 -0.1
3,442,195 + Psest_3272 0.39 -0.9
3,442,195 + Psest_3272 0.39 +2.1
3,442,195 + Psest_3272 0.39 -1.2
3,442,195 + Psest_3272 0.39 -0.5
3,442,195 + Psest_3272 0.39 -0.8
3,442,195 + Psest_3272 0.39 -1.5
3,442,195 + Psest_3272 0.39 -0.9
3,442,198 + Psest_3272 0.40 -0.4
3,442,198 + Psest_3272 0.40 +0.7

Or see this region's nucleotide sequence