Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1731 and HP15_1732 overlap by 8 nucleotides HP15_1732 and HP15_1733 are separated by 89 nucleotides HP15_1733 and HP15_1734 are separated by 51 nucleotides HP15_1734 and HP15_1735 are separated by 26 nucleotides HP15_1735 and HP15_1736 are separated by 58 nucleotides
HP15_1731: HP15_1731 - conserved hypothetical protein, at 1,831,444 to 1,832,049
_1731
HP15_1732: HP15_1732 - conserved hypothetical protein, at 1,832,042 to 1,832,353
_1732
HP15_1733: HP15_1733 - conserved hypothetical protein, at 1,832,443 to 1,832,985
_1733
HP15_1734: HP15_1734 - ABC-type multidrug transport system, ATPase component, at 1,833,037 to 1,833,957
_1734
HP15_1735: HP15_1735 - ABC transporter, permease protein, at 1,833,984 to 1,834,745
_1735
HP15_1736: HP15_1736 - protein containing DUF192, at 1,834,804 to 1,835,259
_1736
Position (kb) 1833
1834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1832.106 kb on + strand, within HP15_1732 at 1832.183 kb on + strand, within HP15_1732 at 1832.191 kb on - strand, within HP15_1732 at 1832.242 kb on + strand, within HP15_1732 at 1832.404 kb on + strand at 1832.495 kb on + strand at 1832.782 kb on + strand, within HP15_1733 at 1832.795 kb on - strand, within HP15_1733 at 1832.929 kb on - strand, within HP15_1733 at 1832.963 kb on - strand at 1833.485 kb on + strand, within HP15_1734 at 1833.493 kb on - strand, within HP15_1734 at 1833.613 kb on - strand, within HP15_1734 at 1833.821 kb on - strand, within HP15_1734 at 1833.822 kb on - strand, within HP15_1734 at 1834.259 kb on + strand, within HP15_1735 at 1834.290 kb on + strand, within HP15_1735 at 1834.295 kb on + strand, within HP15_1735 at 1834.390 kb on - strand, within HP15_1735 at 1834.747 kb on - strand at 1834.812 kb on + strand at 1834.919 kb on + strand, within HP15_1736 at 1834.919 kb on + strand, within HP15_1736
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 1,832,106 + HP15_1732 0.21 -0.0 1,832,183 + HP15_1732 0.45 +2.5 1,832,191 - HP15_1732 0.48 -0.2 1,832,242 + HP15_1732 0.64 +0.5 1,832,404 + +1.2 1,832,495 + -1.1 1,832,782 + HP15_1733 0.62 -3.2 1,832,795 - HP15_1733 0.65 -3.2 1,832,929 - HP15_1733 0.90 +0.3 1,832,963 - +0.4 1,833,485 + HP15_1734 0.49 -3.5 1,833,493 - HP15_1734 0.50 -0.5 1,833,613 - HP15_1734 0.63 -1.4 1,833,821 - HP15_1734 0.85 -0.7 1,833,822 - HP15_1734 0.85 -0.6 1,834,259 + HP15_1735 0.36 -0.3 1,834,290 + HP15_1735 0.40 +0.7 1,834,295 + HP15_1735 0.41 +1.2 1,834,390 - HP15_1735 0.53 -2.2 1,834,747 - +0.0 1,834,812 + -0.5 1,834,919 + HP15_1736 0.25 -2.2 1,834,919 + HP15_1736 0.25 +2.3
Or see this region's nucleotide sequence