Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1464 and HP15_1465 are separated by 1 nucleotides HP15_1465 and HP15_1466 are separated by 155 nucleotides HP15_1466 and HP15_1467 are separated by 217 nucleotides HP15_1467 and HP15_1468 are separated by 34 nucleotides
HP15_1464: HP15_1464 - adenylate/guanylate cyclase, at 1,539,892 to 1,541,331
_1464
HP15_1465: HP15_1465 - conserved hypothetical protein, membrane, at 1,541,333 to 1,541,644
_1465
HP15_1466: HP15_1466 - nitroreductase family protein, at 1,541,800 to 1,542,351
_1466
HP15_1467: HP15_1467 - fFlagellar basal-body rod protein FlgB, at 1,542,569 to 1,542,988
_1467
HP15_1468: HP15_1468 - flagellar basal-body rod protein FlgC-like protein, at 1,543,023 to 1,543,472
_1468
Position (kb)
1541
1542
1543 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1540.850 kb on - strand, within HP15_1464 at 1540.959 kb on - strand, within HP15_1464 at 1540.973 kb on - strand, within HP15_1464 at 1541.106 kb on + strand, within HP15_1464 at 1541.124 kb on - strand, within HP15_1464 at 1541.124 kb on - strand, within HP15_1464 at 1541.147 kb on - strand, within HP15_1464 at 1541.209 kb on - strand at 1541.382 kb on + strand, within HP15_1465 at 1541.388 kb on + strand, within HP15_1465 at 1541.388 kb on + strand, within HP15_1465 at 1541.396 kb on - strand, within HP15_1465 at 1541.570 kb on + strand, within HP15_1465 at 1541.712 kb on + strand at 1541.720 kb on + strand at 1541.842 kb on - strand at 1541.842 kb on - strand at 1541.885 kb on - strand, within HP15_1466 at 1541.915 kb on + strand, within HP15_1466 at 1541.925 kb on + strand, within HP15_1466 at 1541.931 kb on - strand, within HP15_1466 at 1542.066 kb on - strand, within HP15_1466 at 1542.092 kb on - strand, within HP15_1466 at 1542.094 kb on + strand, within HP15_1466 at 1542.161 kb on + strand, within HP15_1466 at 1542.161 kb on + strand, within HP15_1466 at 1542.208 kb on + strand, within HP15_1466 at 1542.208 kb on + strand, within HP15_1466 at 1542.240 kb on - strand, within HP15_1466 at 1542.317 kb on - strand at 1542.403 kb on + strand at 1542.413 kb on + strand at 1542.519 kb on + strand at 1542.546 kb on + strand at 1542.574 kb on - strand at 1542.635 kb on + strand, within HP15_1467 at 1542.892 kb on + strand, within HP15_1467 at 1542.905 kb on - strand, within HP15_1467 at 1542.971 kb on + strand at 1542.995 kb on + strand at 1543.085 kb on + strand, within HP15_1468 at 1543.142 kb on + strand, within HP15_1468 at 1543.269 kb on - strand, within HP15_1468 at 1543.284 kb on + strand, within HP15_1468 at 1543.304 kb on + strand, within HP15_1468
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 1,540,850 - HP15_1464 0.67 -0.4 1,540,959 - HP15_1464 0.74 -2.9 1,540,973 - HP15_1464 0.75 -0.0 1,541,106 + HP15_1464 0.84 -0.3 1,541,124 - HP15_1464 0.86 +0.9 1,541,124 - HP15_1464 0.86 +0.5 1,541,147 - HP15_1464 0.87 -0.2 1,541,209 - -0.4 1,541,382 + HP15_1465 0.16 +0.5 1,541,388 + HP15_1465 0.18 -0.0 1,541,388 + HP15_1465 0.18 -3.4 1,541,396 - HP15_1465 0.20 +0.3 1,541,570 + HP15_1465 0.76 +1.0 1,541,712 + +1.0 1,541,720 + +0.4 1,541,842 - +0.3 1,541,842 - +0.3 1,541,885 - HP15_1466 0.15 +0.3 1,541,915 + HP15_1466 0.21 -0.9 1,541,925 + HP15_1466 0.23 -0.2 1,541,931 - HP15_1466 0.24 -0.4 1,542,066 - HP15_1466 0.48 -0.0 1,542,092 - HP15_1466 0.53 -1.0 1,542,094 + HP15_1466 0.53 +0.5 1,542,161 + HP15_1466 0.65 -0.6 1,542,161 + HP15_1466 0.65 -0.9 1,542,208 + HP15_1466 0.74 -0.6 1,542,208 + HP15_1466 0.74 -1.2 1,542,240 - HP15_1466 0.80 -0.2 1,542,317 - +0.5 1,542,403 + +0.9 1,542,413 + +0.1 1,542,519 + +0.6 1,542,546 + -0.1 1,542,574 - +0.2 1,542,635 + HP15_1467 0.16 -0.1 1,542,892 + HP15_1467 0.77 -0.2 1,542,905 - HP15_1467 0.80 -0.1 1,542,971 + +1.7 1,542,995 + -0.9 1,543,085 + HP15_1468 0.14 -0.4 1,543,142 + HP15_1468 0.26 +0.5 1,543,269 - HP15_1468 0.55 -0.3 1,543,284 + HP15_1468 0.58 -0.1 1,543,304 + HP15_1468 0.62 -1.1
Or see this region's nucleotide sequence