Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1206 and HP15_1207 are separated by 298 nucleotides HP15_1207 and HP15_1208 are separated by 11 nucleotides
HP15_1206: HP15_1206 - radical SAM domain protein, at 1,249,090 to 1,250,001
_1206
HP15_1207: HP15_1207 - conserved hypothetical protein, at 1,250,300 to 1,251,667
_1207
HP15_1208: HP15_1208 - conserved hypothetical protein, at 1,251,679 to 1,253,907
_1208
Position (kb)
1250
1251
1252 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1249.303 kb on + strand, within HP15_1206 at 1249.312 kb on + strand, within HP15_1206 at 1249.374 kb on - strand, within HP15_1206 at 1249.385 kb on - strand, within HP15_1206 at 1249.459 kb on + strand, within HP15_1206 at 1249.462 kb on - strand, within HP15_1206 at 1249.492 kb on + strand, within HP15_1206 at 1249.500 kb on - strand, within HP15_1206 at 1249.569 kb on + strand, within HP15_1206 at 1249.571 kb on + strand, within HP15_1206 at 1249.590 kb on + strand, within HP15_1206 at 1249.757 kb on - strand, within HP15_1206 at 1249.824 kb on + strand, within HP15_1206 at 1249.824 kb on - strand, within HP15_1206 at 1250.070 kb on - strand at 1250.146 kb on - strand at 1250.149 kb on + strand at 1250.162 kb on - strand at 1250.172 kb on + strand at 1250.177 kb on + strand at 1250.231 kb on + strand at 1250.231 kb on + strand at 1250.263 kb on + strand at 1250.269 kb on - strand at 1250.289 kb on + strand at 1250.292 kb on + strand at 1250.340 kb on + strand at 1250.489 kb on - strand, within HP15_1207 at 1250.512 kb on - strand, within HP15_1207 at 1250.735 kb on - strand, within HP15_1207 at 1250.764 kb on + strand, within HP15_1207 at 1250.991 kb on + strand, within HP15_1207 at 1250.991 kb on + strand, within HP15_1207 at 1250.999 kb on - strand, within HP15_1207 at 1251.048 kb on + strand, within HP15_1207 at 1251.166 kb on + strand, within HP15_1207 at 1251.174 kb on - strand, within HP15_1207 at 1251.179 kb on + strand, within HP15_1207 at 1251.179 kb on + strand, within HP15_1207 at 1251.179 kb on - strand, within HP15_1207 at 1251.187 kb on - strand, within HP15_1207 at 1251.187 kb on - strand, within HP15_1207 at 1251.287 kb on - strand, within HP15_1207 at 1251.287 kb on - strand, within HP15_1207 at 1251.358 kb on + strand, within HP15_1207 at 1251.366 kb on - strand, within HP15_1207 at 1251.368 kb on + strand, within HP15_1207 at 1251.585 kb on + strand at 1251.589 kb on - strand at 1251.612 kb on - strand at 1251.855 kb on - strand at 1251.863 kb on - strand at 1251.871 kb on - strand at 1251.871 kb on - strand at 1252.215 kb on + strand, within HP15_1208 at 1252.228 kb on - strand, within HP15_1208 at 1252.284 kb on - strand, within HP15_1208 at 1252.301 kb on - strand, within HP15_1208 at 1252.325 kb on + strand, within HP15_1208 at 1252.447 kb on + strand, within HP15_1208 at 1252.455 kb on - strand, within HP15_1208 at 1252.625 kb on + strand, within HP15_1208
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 1,249,303 + HP15_1206 0.23 -0.7 1,249,312 + HP15_1206 0.24 +0.9 1,249,374 - HP15_1206 0.31 +0.3 1,249,385 - HP15_1206 0.32 +0.2 1,249,459 + HP15_1206 0.40 -0.8 1,249,462 - HP15_1206 0.41 +1.6 1,249,492 + HP15_1206 0.44 -0.2 1,249,500 - HP15_1206 0.45 +0.2 1,249,569 + HP15_1206 0.53 -0.1 1,249,571 + HP15_1206 0.53 +0.2 1,249,590 + HP15_1206 0.55 +0.0 1,249,757 - HP15_1206 0.73 +0.2 1,249,824 + HP15_1206 0.80 -2.6 1,249,824 - HP15_1206 0.80 -0.2 1,250,070 - +0.0 1,250,146 - +0.6 1,250,149 + +0.5 1,250,162 - -1.1 1,250,172 + +0.1 1,250,177 + -0.7 1,250,231 + -0.2 1,250,231 + +0.7 1,250,263 + +0.1 1,250,269 - +0.3 1,250,289 + -0.0 1,250,292 + +0.3 1,250,340 + -0.1 1,250,489 - HP15_1207 0.14 +1.3 1,250,512 - HP15_1207 0.15 -0.2 1,250,735 - HP15_1207 0.32 -0.2 1,250,764 + HP15_1207 0.34 +1.4 1,250,991 + HP15_1207 0.51 -1.2 1,250,991 + HP15_1207 0.51 +0.3 1,250,999 - HP15_1207 0.51 +1.3 1,251,048 + HP15_1207 0.55 +0.5 1,251,166 + HP15_1207 0.63 +0.1 1,251,174 - HP15_1207 0.64 +1.5 1,251,179 + HP15_1207 0.64 +0.5 1,251,179 + HP15_1207 0.64 -0.3 1,251,179 - HP15_1207 0.64 +1.7 1,251,187 - HP15_1207 0.65 -0.1 1,251,187 - HP15_1207 0.65 +0.2 1,251,287 - HP15_1207 0.72 +0.2 1,251,287 - HP15_1207 0.72 +1.1 1,251,358 + HP15_1207 0.77 +0.2 1,251,366 - HP15_1207 0.78 +0.2 1,251,368 + HP15_1207 0.78 -0.4 1,251,585 + -0.1 1,251,589 - +1.5 1,251,612 - -0.2 1,251,855 - +0.0 1,251,863 - +0.2 1,251,871 - -0.2 1,251,871 - -0.7 1,252,215 + HP15_1208 0.24 -0.6 1,252,228 - HP15_1208 0.25 +0.3 1,252,284 - HP15_1208 0.27 +0.7 1,252,301 - HP15_1208 0.28 -3.4 1,252,325 + HP15_1208 0.29 -0.9 1,252,447 + HP15_1208 0.34 +1.7 1,252,455 - HP15_1208 0.35 -0.2 1,252,625 + HP15_1208 0.42 +1.7
Or see this region's nucleotide sequence