Strain Fitness in Marinobacter adhaerens HP15 around HP15_1207

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1206 and HP15_1207 are separated by 298 nucleotidesHP15_1207 and HP15_1208 are separated by 11 nucleotides HP15_1206: HP15_1206 - radical SAM domain protein, at 1,249,090 to 1,250,001 _1206 HP15_1207: HP15_1207 - conserved hypothetical protein, at 1,250,300 to 1,251,667 _1207 HP15_1208: HP15_1208 - conserved hypothetical protein, at 1,251,679 to 1,253,907 _1208 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -3 -2 -1 0 1at 1249.303 kb on + strand, within HP15_1206at 1249.312 kb on + strand, within HP15_1206at 1249.374 kb on - strand, within HP15_1206at 1249.385 kb on - strand, within HP15_1206at 1249.459 kb on + strand, within HP15_1206at 1249.462 kb on - strand, within HP15_1206at 1249.492 kb on + strand, within HP15_1206at 1249.500 kb on - strand, within HP15_1206at 1249.569 kb on + strand, within HP15_1206at 1249.571 kb on + strand, within HP15_1206at 1249.590 kb on + strand, within HP15_1206at 1249.757 kb on - strand, within HP15_1206at 1249.824 kb on + strand, within HP15_1206at 1249.824 kb on - strand, within HP15_1206at 1250.070 kb on - strandat 1250.146 kb on - strandat 1250.149 kb on + strandat 1250.162 kb on - strandat 1250.172 kb on + strandat 1250.177 kb on + strandat 1250.231 kb on + strandat 1250.231 kb on + strandat 1250.263 kb on + strandat 1250.269 kb on - strandat 1250.289 kb on + strandat 1250.292 kb on + strandat 1250.340 kb on + strandat 1250.489 kb on - strand, within HP15_1207at 1250.512 kb on - strand, within HP15_1207at 1250.735 kb on - strand, within HP15_1207at 1250.764 kb on + strand, within HP15_1207at 1250.991 kb on + strand, within HP15_1207at 1250.991 kb on + strand, within HP15_1207at 1250.999 kb on - strand, within HP15_1207at 1251.048 kb on + strand, within HP15_1207at 1251.166 kb on + strand, within HP15_1207at 1251.174 kb on - strand, within HP15_1207at 1251.179 kb on + strand, within HP15_1207at 1251.179 kb on + strand, within HP15_1207at 1251.179 kb on - strand, within HP15_1207at 1251.187 kb on - strand, within HP15_1207at 1251.187 kb on - strand, within HP15_1207at 1251.287 kb on - strand, within HP15_1207at 1251.287 kb on - strand, within HP15_1207at 1251.358 kb on + strand, within HP15_1207at 1251.366 kb on - strand, within HP15_1207at 1251.368 kb on + strand, within HP15_1207at 1251.585 kb on + strandat 1251.589 kb on - strandat 1251.612 kb on - strandat 1251.855 kb on - strandat 1251.863 kb on - strandat 1251.871 kb on - strandat 1251.871 kb on - strandat 1252.215 kb on + strand, within HP15_1208at 1252.228 kb on - strand, within HP15_1208at 1252.284 kb on - strand, within HP15_1208at 1252.301 kb on - strand, within HP15_1208at 1252.325 kb on + strand, within HP15_1208at 1252.447 kb on + strand, within HP15_1208at 1252.455 kb on - strand, within HP15_1208at 1252.625 kb on + strand, within HP15_1208

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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1,249,303 + HP15_1206 0.23 -0.7
1,249,312 + HP15_1206 0.24 +0.9
1,249,374 - HP15_1206 0.31 +0.3
1,249,385 - HP15_1206 0.32 +0.2
1,249,459 + HP15_1206 0.40 -0.8
1,249,462 - HP15_1206 0.41 +1.6
1,249,492 + HP15_1206 0.44 -0.2
1,249,500 - HP15_1206 0.45 +0.2
1,249,569 + HP15_1206 0.53 -0.1
1,249,571 + HP15_1206 0.53 +0.2
1,249,590 + HP15_1206 0.55 +0.0
1,249,757 - HP15_1206 0.73 +0.2
1,249,824 + HP15_1206 0.80 -2.6
1,249,824 - HP15_1206 0.80 -0.2
1,250,070 - +0.0
1,250,146 - +0.6
1,250,149 + +0.5
1,250,162 - -1.1
1,250,172 + +0.1
1,250,177 + -0.7
1,250,231 + -0.2
1,250,231 + +0.7
1,250,263 + +0.1
1,250,269 - +0.3
1,250,289 + -0.0
1,250,292 + +0.3
1,250,340 + -0.1
1,250,489 - HP15_1207 0.14 +1.3
1,250,512 - HP15_1207 0.15 -0.2
1,250,735 - HP15_1207 0.32 -0.2
1,250,764 + HP15_1207 0.34 +1.4
1,250,991 + HP15_1207 0.51 -1.2
1,250,991 + HP15_1207 0.51 +0.3
1,250,999 - HP15_1207 0.51 +1.3
1,251,048 + HP15_1207 0.55 +0.5
1,251,166 + HP15_1207 0.63 +0.1
1,251,174 - HP15_1207 0.64 +1.5
1,251,179 + HP15_1207 0.64 +0.5
1,251,179 + HP15_1207 0.64 -0.3
1,251,179 - HP15_1207 0.64 +1.7
1,251,187 - HP15_1207 0.65 -0.1
1,251,187 - HP15_1207 0.65 +0.2
1,251,287 - HP15_1207 0.72 +0.2
1,251,287 - HP15_1207 0.72 +1.1
1,251,358 + HP15_1207 0.77 +0.2
1,251,366 - HP15_1207 0.78 +0.2
1,251,368 + HP15_1207 0.78 -0.4
1,251,585 + -0.1
1,251,589 - +1.5
1,251,612 - -0.2
1,251,855 - +0.0
1,251,863 - +0.2
1,251,871 - -0.2
1,251,871 - -0.7
1,252,215 + HP15_1208 0.24 -0.6
1,252,228 - HP15_1208 0.25 +0.3
1,252,284 - HP15_1208 0.27 +0.7
1,252,301 - HP15_1208 0.28 -3.4
1,252,325 + HP15_1208 0.29 -0.9
1,252,447 + HP15_1208 0.34 +1.7
1,252,455 - HP15_1208 0.35 -0.2
1,252,625 + HP15_1208 0.42 +1.7

Or see this region's nucleotide sequence