Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3718

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3717 and Dshi_3718 are separated by 53 nucleotidesDshi_3718 and Dshi_3719 are separated by 99 nucleotides Dshi_3717: Dshi_3717 - aldehyde dehydrogenase (RefSeq), at 122,126 to 123,583 _3717 Dshi_3718: Dshi_3718 - transcriptional regulator, AraC family (RefSeq), at 123,637 to 124,554 _3718 Dshi_3719: Dshi_3719 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 124,654 to 127,605 _3719 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 122.679 kb on - strand, within Dshi_3717at 122.683 kb on + strand, within Dshi_3717at 122.698 kb on + strand, within Dshi_3717at 122.918 kb on + strand, within Dshi_3717at 122.972 kb on + strand, within Dshi_3717at 122.974 kb on + strand, within Dshi_3717at 122.982 kb on - strand, within Dshi_3717at 123.049 kb on + strand, within Dshi_3717at 123.067 kb on - strand, within Dshi_3717at 123.138 kb on - strand, within Dshi_3717at 123.138 kb on - strand, within Dshi_3717at 123.138 kb on - strand, within Dshi_3717at 123.152 kb on + strand, within Dshi_3717at 123.152 kb on + strand, within Dshi_3717at 123.160 kb on - strand, within Dshi_3717at 123.160 kb on - strand, within Dshi_3717at 123.160 kb on - strand, within Dshi_3717at 123.184 kb on - strand, within Dshi_3717at 123.201 kb on + strand, within Dshi_3717at 123.203 kb on + strand, within Dshi_3717at 123.236 kb on + strand, within Dshi_3717at 123.261 kb on + strand, within Dshi_3717at 123.342 kb on + strand, within Dshi_3717at 123.358 kb on - strand, within Dshi_3717at 123.370 kb on + strand, within Dshi_3717at 123.378 kb on - strand, within Dshi_3717at 123.426 kb on - strand, within Dshi_3717at 123.426 kb on - strand, within Dshi_3717at 123.443 kb on + strandat 123.456 kb on - strandat 123.475 kb on - strandat 123.494 kb on + strandat 123.500 kb on + strandat 123.673 kb on + strandat 123.698 kb on - strandat 123.700 kb on + strandat 123.705 kb on + strandat 123.752 kb on + strand, within Dshi_3718at 123.782 kb on + strand, within Dshi_3718at 123.782 kb on + strand, within Dshi_3718at 123.782 kb on + strand, within Dshi_3718at 123.787 kb on + strand, within Dshi_3718at 123.790 kb on - strand, within Dshi_3718at 123.800 kb on - strand, within Dshi_3718at 123.865 kb on + strand, within Dshi_3718at 123.865 kb on + strand, within Dshi_3718at 123.886 kb on - strand, within Dshi_3718at 123.892 kb on + strand, within Dshi_3718at 123.949 kb on - strand, within Dshi_3718at 124.016 kb on + strand, within Dshi_3718at 124.050 kb on + strand, within Dshi_3718at 124.050 kb on + strand, within Dshi_3718at 124.081 kb on - strand, within Dshi_3718at 124.099 kb on - strand, within Dshi_3718at 124.102 kb on + strand, within Dshi_3718at 124.121 kb on + strand, within Dshi_3718at 124.137 kb on - strand, within Dshi_3718at 124.153 kb on - strand, within Dshi_3718at 124.163 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.169 kb on + strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.177 kb on - strand, within Dshi_3718at 124.189 kb on + strand, within Dshi_3718at 124.189 kb on + strand, within Dshi_3718at 124.201 kb on + strand, within Dshi_3718at 124.218 kb on + strand, within Dshi_3718at 124.244 kb on + strand, within Dshi_3718at 124.282 kb on - strand, within Dshi_3718at 124.282 kb on - strand, within Dshi_3718at 124.286 kb on + strand, within Dshi_3718at 124.286 kb on + strand, within Dshi_3718at 124.291 kb on + strand, within Dshi_3718at 124.291 kb on + strand, within Dshi_3718at 124.292 kb on - strand, within Dshi_3718at 124.345 kb on - strand, within Dshi_3718at 124.345 kb on - strand, within Dshi_3718at 124.358 kb on - strand, within Dshi_3718at 124.365 kb on + strand, within Dshi_3718at 124.425 kb on + strand, within Dshi_3718at 124.434 kb on + strand, within Dshi_3718at 124.434 kb on + strand, within Dshi_3718at 124.439 kb on + strand, within Dshi_3718at 124.447 kb on - strand, within Dshi_3718at 124.494 kb on + strandat 124.510 kb on - strandat 124.529 kb on - strandat 124.549 kb on + strandat 124.557 kb on + strandat 124.602 kb on - strandat 124.602 kb on - strandat 124.607 kb on + strandat 124.625 kb on - strandat 124.643 kb on - strandat 124.651 kb on - strandat 124.661 kb on + strandat 124.671 kb on + strandat 124.680 kb on - strandat 124.712 kb on - strandat 124.749 kb on + strandat 124.754 kb on + strandat 124.776 kb on + strandat 124.779 kb on - strandat 124.781 kb on + strandat 124.789 kb on - strandat 124.791 kb on - strandat 124.860 kb on - strandat 124.861 kb on + strandat 124.874 kb on - strandat 124.888 kb on + strandat 124.901 kb on + strandat 124.909 kb on - strandat 124.909 kb on - strandat 124.945 kb on - strandat 124.958 kb on - strand, within Dshi_3719at 124.974 kb on + strand, within Dshi_3719at 124.974 kb on + strand, within Dshi_3719at 125.009 kb on + strand, within Dshi_3719at 125.017 kb on - strand, within Dshi_3719at 125.038 kb on - strand, within Dshi_3719at 125.038 kb on - strand, within Dshi_3719at 125.048 kb on - strand, within Dshi_3719at 125.062 kb on + strand, within Dshi_3719at 125.084 kb on + strand, within Dshi_3719at 125.084 kb on + strand, within Dshi_3719at 125.084 kb on + strand, within Dshi_3719at 125.086 kb on + strand, within Dshi_3719at 125.092 kb on - strand, within Dshi_3719at 125.094 kb on - strand, within Dshi_3719at 125.097 kb on - strand, within Dshi_3719at 125.146 kb on + strand, within Dshi_3719at 125.201 kb on + strand, within Dshi_3719at 125.231 kb on - strand, within Dshi_3719at 125.239 kb on + strand, within Dshi_3719at 125.247 kb on - strand, within Dshi_3719at 125.247 kb on - strand, within Dshi_3719at 125.270 kb on + strand, within Dshi_3719at 125.270 kb on + strand, within Dshi_3719at 125.278 kb on - strand, within Dshi_3719at 125.334 kb on + strand, within Dshi_3719at 125.351 kb on + strand, within Dshi_3719at 125.358 kb on - strand, within Dshi_3719at 125.488 kb on + strand, within Dshi_3719at 125.497 kb on + strand, within Dshi_3719at 125.505 kb on - strand, within Dshi_3719at 125.522 kb on + strand, within Dshi_3719at 125.530 kb on - strand, within Dshi_3719at 125.541 kb on + strand, within Dshi_3719

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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122,679 - Dshi_3717 0.38 +0.3
122,683 + Dshi_3717 0.38 +1.9
122,698 + Dshi_3717 0.39 -0.0
122,918 + Dshi_3717 0.54 -0.1
122,972 + Dshi_3717 0.58 -1.7
122,974 + Dshi_3717 0.58 -1.0
122,982 - Dshi_3717 0.59 -0.4
123,049 + Dshi_3717 0.63 +0.6
123,067 - Dshi_3717 0.65 -0.2
123,138 - Dshi_3717 0.69 -1.2
123,138 - Dshi_3717 0.69 +1.0
123,138 - Dshi_3717 0.69 +1.3
123,152 + Dshi_3717 0.70 -0.0
123,152 + Dshi_3717 0.70 +0.4
123,160 - Dshi_3717 0.71 +0.4
123,160 - Dshi_3717 0.71 -0.3
123,160 - Dshi_3717 0.71 -0.4
123,184 - Dshi_3717 0.73 -0.6
123,201 + Dshi_3717 0.74 +0.8
123,203 + Dshi_3717 0.74 -0.1
123,236 + Dshi_3717 0.76 +0.1
123,261 + Dshi_3717 0.78 -0.3
123,342 + Dshi_3717 0.83 -0.2
123,358 - Dshi_3717 0.84 -1.9
123,370 + Dshi_3717 0.85 -0.3
123,378 - Dshi_3717 0.86 +0.4
123,426 - Dshi_3717 0.89 +1.4
123,426 - Dshi_3717 0.89 +0.5
123,443 + +0.4
123,456 - -1.3
123,475 - +0.2
123,494 + +0.6
123,500 + +0.2
123,673 + +1.3
123,698 - +1.4
123,700 + +1.0
123,705 + -0.9
123,752 + Dshi_3718 0.13 -0.2
123,782 + Dshi_3718 0.16 +1.7
123,782 + Dshi_3718 0.16 +0.9
123,782 + Dshi_3718 0.16 +0.4
123,787 + Dshi_3718 0.16 -0.1
123,790 - Dshi_3718 0.17 +0.6
123,800 - Dshi_3718 0.18 -1.0
123,865 + Dshi_3718 0.25 -1.0
123,865 + Dshi_3718 0.25 -0.5
123,886 - Dshi_3718 0.27 -0.3
123,892 + Dshi_3718 0.28 +0.2
123,949 - Dshi_3718 0.34 +0.8
124,016 + Dshi_3718 0.41 -0.2
124,050 + Dshi_3718 0.45 +0.7
124,050 + Dshi_3718 0.45 -0.7
124,081 - Dshi_3718 0.48 +0.3
124,099 - Dshi_3718 0.50 -0.8
124,102 + Dshi_3718 0.51 -0.2
124,121 + Dshi_3718 0.53 +0.2
124,137 - Dshi_3718 0.54 +0.4
124,153 - Dshi_3718 0.56 -0.5
124,163 + Dshi_3718 0.57 -1.3
124,169 + Dshi_3718 0.58 +0.4
124,169 + Dshi_3718 0.58 -2.4
124,169 + Dshi_3718 0.58 -1.2
124,169 + Dshi_3718 0.58 +0.0
124,169 + Dshi_3718 0.58 -0.4
124,169 + Dshi_3718 0.58 +0.2
124,169 + Dshi_3718 0.58 -0.2
124,169 + Dshi_3718 0.58 -0.9
124,169 + Dshi_3718 0.58 +0.8
124,169 + Dshi_3718 0.58 -2.0
124,169 + Dshi_3718 0.58 -0.5
124,169 + Dshi_3718 0.58 +0.1
124,177 - Dshi_3718 0.59 -0.8
124,177 - Dshi_3718 0.59 -0.8
124,177 - Dshi_3718 0.59 -1.0
124,177 - Dshi_3718 0.59 +1.0
124,177 - Dshi_3718 0.59 -0.1
124,177 - Dshi_3718 0.59 -0.2
124,177 - Dshi_3718 0.59 +0.6
124,189 + Dshi_3718 0.60 +0.3
124,189 + Dshi_3718 0.60 +0.6
124,201 + Dshi_3718 0.61 -0.4
124,218 + Dshi_3718 0.63 -0.4
124,244 + Dshi_3718 0.66 +0.5
124,282 - Dshi_3718 0.70 -0.3
124,282 - Dshi_3718 0.70 -0.9
124,286 + Dshi_3718 0.71 +0.9
124,286 + Dshi_3718 0.71 +0.4
124,291 + Dshi_3718 0.71 +0.5
124,291 + Dshi_3718 0.71 -0.3
124,292 - Dshi_3718 0.71 -0.3
124,345 - Dshi_3718 0.77 +1.4
124,345 - Dshi_3718 0.77 -0.0
124,358 - Dshi_3718 0.79 -0.4
124,365 + Dshi_3718 0.79 -0.2
124,425 + Dshi_3718 0.86 -0.4
124,434 + Dshi_3718 0.87 -0.5
124,434 + Dshi_3718 0.87 -0.5
124,439 + Dshi_3718 0.87 -0.2
124,447 - Dshi_3718 0.88 +0.0
124,494 + +0.8
124,510 - -0.7
124,529 - -0.8
124,549 + -0.1
124,557 + +0.6
124,602 - +0.4
124,602 - -0.5
124,607 + -0.9
124,625 - +0.7
124,643 - +0.8
124,651 - -1.1
124,661 + +0.1
124,671 + -0.0
124,680 - +0.4
124,712 - +0.8
124,749 + -0.8
124,754 + -0.9
124,776 + -0.8
124,779 - +0.5
124,781 + -0.3
124,789 - -0.5
124,791 - +1.0
124,860 - +0.6
124,861 + -0.4
124,874 - -0.1
124,888 + -0.3
124,901 + -0.2
124,909 - +0.2
124,909 - +0.6
124,945 - +1.3
124,958 - Dshi_3719 0.10 -0.6
124,974 + Dshi_3719 0.11 -0.5
124,974 + Dshi_3719 0.11 +1.1
125,009 + Dshi_3719 0.12 -0.7
125,017 - Dshi_3719 0.12 -0.4
125,038 - Dshi_3719 0.13 +0.0
125,038 - Dshi_3719 0.13 -1.0
125,048 - Dshi_3719 0.13 +0.4
125,062 + Dshi_3719 0.14 +0.2
125,084 + Dshi_3719 0.15 +3.5
125,084 + Dshi_3719 0.15 +0.4
125,084 + Dshi_3719 0.15 -0.5
125,086 + Dshi_3719 0.15 +0.4
125,092 - Dshi_3719 0.15 -0.4
125,094 - Dshi_3719 0.15 -0.3
125,097 - Dshi_3719 0.15 -0.2
125,146 + Dshi_3719 0.17 +0.5
125,201 + Dshi_3719 0.19 +0.1
125,231 - Dshi_3719 0.20 +0.8
125,239 + Dshi_3719 0.20 +0.8
125,247 - Dshi_3719 0.20 -0.0
125,247 - Dshi_3719 0.20 -0.3
125,270 + Dshi_3719 0.21 -0.2
125,270 + Dshi_3719 0.21 +0.5
125,278 - Dshi_3719 0.21 -0.5
125,334 + Dshi_3719 0.23 +0.1
125,351 + Dshi_3719 0.24 -0.2
125,358 - Dshi_3719 0.24 +0.2
125,488 + Dshi_3719 0.28 +0.2
125,497 + Dshi_3719 0.29 +0.6
125,505 - Dshi_3719 0.29 +1.9
125,522 + Dshi_3719 0.29 -0.7
125,530 - Dshi_3719 0.30 -0.7
125,541 + Dshi_3719 0.30 +1.1

Or see this region's nucleotide sequence