Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3378

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,549,558	-				+0.8
3,549,558	-				+0.5
3,549,559	-				+1.3
3,549,565	+				-1.0
3,549,565	+				-1.6
3,549,565	+				+0.1
3,549,565	+				+0.4
3,549,565	+				+0.4
3,549,565	+				+0.7
3,549,568	-				+0.4
3,549,573	-				+0.3
3,549,573	-				+0.2
3,549,573	-				+0.5
3,549,573	-				+0.1
3,549,573	-				+1.0
3,549,573	-				-1.0
3,549,622	+				-0.4
3,549,642	+		Dshi_3377	0.11	+0.5
3,549,650	-		Dshi_3377	0.12	+0.0
3,549,656	+		Dshi_3377	0.12	-1.3
3,549,675	+		Dshi_3377	0.14	+0.6
3,549,705	-		Dshi_3377	0.17	-0.6
3,549,801	+		Dshi_3377	0.27	+1.8
3,549,852	-		Dshi_3377	0.32	+0.1
3,549,933	-		Dshi_3377	0.40	+0.5
3,549,945	-		Dshi_3377	0.41	+0.7
3,550,003	+		Dshi_3377	0.47	+0.7
3,550,024	+		Dshi_3377	0.49	+0.7
3,550,024	+		Dshi_3377	0.49	-0.0
3,550,024	-		Dshi_3377	0.49	+0.9
3,550,024	-		Dshi_3377	0.49	+0.9
3,550,034	+		Dshi_3377	0.50	+0.4
3,550,037	-		Dshi_3377	0.50	+0.4
3,550,037	-		Dshi_3377	0.50	-1.3
3,550,073	-		Dshi_3377	0.54	-0.1
3,550,142	+		Dshi_3377	0.61	+0.6
3,550,157	-		Dshi_3377	0.62	+0.6
3,550,168	+		Dshi_3377	0.63	+0.9
3,550,177	-		Dshi_3377	0.64	-0.1
3,550,183	+		Dshi_3377	0.65	+0.6
3,550,209	+		Dshi_3377	0.67	+1.3
3,550,209	+		Dshi_3377	0.67	+0.9
3,550,226	+		Dshi_3377	0.69	+0.9
3,550,236	+		Dshi_3377	0.70	+0.5
3,550,289	+		Dshi_3377	0.75	+1.3
3,550,289	+		Dshi_3377	0.75	-0.6
3,550,298	+		Dshi_3377	0.76	+1.3
3,550,298	+		Dshi_3377	0.76	+0.9
3,550,344	-		Dshi_3377	0.81	+0.4
3,550,350	-		Dshi_3377	0.81	+1.5
3,550,355	-		Dshi_3377	0.82	+0.2
3,550,416	+		Dshi_3377	0.88	+0.2
3,550,434	+		Dshi_3377	0.89	+0.9
3,550,442	-				+0.2
3,550,444	+				+1.1
3,550,444	+				+0.4
3,550,444	+				+1.1
3,550,444	+				-0.1
3,550,444	+				+1.6
3,550,444	+				+0.1
3,550,444	+				+0.1
3,550,452	-				+1.1
3,550,452	-				+0.3
3,550,452	-				+0.1
3,550,452	-				+0.4
3,550,452	-				+0.4
3,550,452	-				+0.4
3,550,452	-				+0.8
3,550,452	-				+0.4
3,550,465	+				-0.5
3,550,489	-				+0.6
3,550,535	+				-0.5
3,550,542	+				+0.3
3,550,554	+				+0.5
3,550,558	-				+2.7
3,550,558	-				-0.5
3,550,613	+				+1.4
3,550,630	+				+0.4
3,550,631	-				+0.2
3,550,660	+				+1.1
3,550,661	+				+0.1
3,550,671	+				+0.8
3,550,671	+				+2.7
3,550,681	-				+0.3
3,550,709	-		Dshi_3378	0.11	+0.7
3,550,720	+		Dshi_3378	0.12	+0.4
3,550,747	-		Dshi_3378	0.14	+0.2
3,550,756	-		Dshi_3378	0.15	+0.7
3,550,761	-		Dshi_3378	0.15	+0.8
3,550,765	+		Dshi_3378	0.15	+1.5
3,550,773	+		Dshi_3378	0.16	-1.2
3,550,775	+		Dshi_3378	0.16	+1.0
3,550,783	-		Dshi_3378	0.16	+0.6
3,550,863	-		Dshi_3378	0.22	-0.5
3,550,890	+		Dshi_3378	0.24	+0.3
3,550,909	+		Dshi_3378	0.25	-0.2
3,550,926	+		Dshi_3378	0.26	+0.7
3,550,934	+		Dshi_3378	0.27	-0.7
3,551,009	+		Dshi_3378	0.32	+0.3
3,551,028	+		Dshi_3378	0.33	+0.2
3,551,036	-		Dshi_3378	0.34	-0.1
3,551,040	+		Dshi_3378	0.34	-0.1
3,551,068	-		Dshi_3378	0.36	-0.1
3,551,078	-		Dshi_3378	0.37	+0.9
3,551,079	+		Dshi_3378	0.37	+0.0
3,551,104	+		Dshi_3378	0.38	+0.5
3,551,162	+		Dshi_3378	0.42	+0.1
3,551,191	+		Dshi_3378	0.44	+0.7
3,551,199	-		Dshi_3378	0.45	-0.3
3,551,199	-		Dshi_3378	0.45	+1.7
3,551,199	-		Dshi_3378	0.45	-0.4
3,551,220	+		Dshi_3378	0.46	+0.9
3,551,220	+		Dshi_3378	0.46	+0.0
3,551,220	+		Dshi_3378	0.46	-0.0
3,551,220	+		Dshi_3378	0.46	+1.0
3,551,220	+		Dshi_3378	0.46	+0.9
3,551,220	+		Dshi_3378	0.46	+0.6
3,551,220	+		Dshi_3378	0.46	+1.3
3,551,228	-		Dshi_3378	0.47	-0.1
3,551,228	-		Dshi_3378	0.47	+1.1
3,551,228	-		Dshi_3378	0.47	-0.0
3,551,228	-		Dshi_3378	0.47	+0.5
3,551,237	-		Dshi_3378	0.48	+1.2
3,551,247	+		Dshi_3378	0.48	+1.4
3,551,252	+		Dshi_3378	0.49	+0.1
3,551,252	+		Dshi_3378	0.49	+0.1
3,551,252	+		Dshi_3378	0.49	+0.3
3,551,252	+		Dshi_3378	0.49	+2.1
3,551,252	+		Dshi_3378	0.49	+0.4
3,551,252	+		Dshi_3378	0.49	+0.7
3,551,252	+		Dshi_3378	0.49	+0.2
3,551,279	-		Dshi_3378	0.50	+0.7
3,551,279	-		Dshi_3378	0.50	+0.4
3,551,289	-		Dshi_3378	0.51	-0.1
3,551,299	+		Dshi_3378	0.52	-0.2
3,551,299	+		Dshi_3378	0.52	+0.4
3,551,299	+		Dshi_3378	0.52	+0.8
3,551,299	-		Dshi_3378	0.52	+0.6
3,551,304	+		Dshi_3378	0.52	-1.0
3,551,307	-		Dshi_3378	0.52	+0.4
3,551,307	-		Dshi_3378	0.52	-1.2
3,551,307	-		Dshi_3378	0.52	+0.9
3,551,307	-		Dshi_3378	0.52	-0.1
3,551,307	-		Dshi_3378	0.52	+0.9
3,551,307	-		Dshi_3378	0.52	+0.5
3,551,307	-		Dshi_3378	0.52	+0.2
3,551,307	-		Dshi_3378	0.52	+0.2
3,551,312	+		Dshi_3378	0.53	+1.2
3,551,312	-		Dshi_3378	0.53	-0.5
3,551,312	-		Dshi_3378	0.53	+0.4
3,551,326	+		Dshi_3378	0.54	+2.1
3,551,334	-		Dshi_3378	0.54	-0.2
3,551,339	+		Dshi_3378	0.55	+1.3
3,551,339	+		Dshi_3378	0.55	+0.3
3,551,347	-		Dshi_3378	0.55	-0.2
3,551,353	+		Dshi_3378	0.56	+0.1
3,551,355	+		Dshi_3378	0.56	+0.5
3,551,355	+		Dshi_3378	0.56	-0.4
3,551,355	+		Dshi_3378	0.56	+0.2
3,551,355	-		Dshi_3378	0.56	+0.7
3,551,370	+		Dshi_3378	0.57	+0.7
3,551,370	+		Dshi_3378	0.57	+0.6
3,551,373	-		Dshi_3378	0.57	+0.4
3,551,393	+		Dshi_3378	0.58	+1.1
3,551,397	+		Dshi_3378	0.59	+1.1
3,551,401	-		Dshi_3378	0.59	-0.1
3,551,401	-		Dshi_3378	0.59	-0.3
3,551,413	+		Dshi_3378	0.60	+0.4
3,551,418	+		Dshi_3378	0.60	+0.8
3,551,420	-		Dshi_3378	0.60	-0.3
3,551,431	+		Dshi_3378	0.61	+0.3
3,551,431	+		Dshi_3378	0.61	+0.1
3,551,439	-		Dshi_3378	0.61	+1.0
3,551,446	-		Dshi_3378	0.62	-0.0
3,551,464	+		Dshi_3378	0.63	+0.2
3,551,500	-		Dshi_3378	0.66	+0.2
3,551,500	-		Dshi_3378	0.66	+2.3
3,551,531	+		Dshi_3378	0.68	+1.2
3,551,536	+		Dshi_3378	0.68	+0.5
3,551,550	+		Dshi_3378	0.69	+2.3
3,551,575	-		Dshi_3378	0.71	+0.2
3,551,576	+		Dshi_3378	0.71	+0.8
3,551,587	+		Dshi_3378	0.72	+0.6
3,551,587	+		Dshi_3378	0.72	+0.1
3,551,587	+		Dshi_3378	0.72	+1.1
3,551,587	+		Dshi_3378	0.72	+0.9
3,551,587	+		Dshi_3378	0.72	+0.7
3,551,587	-		Dshi_3378	0.72	-1.2
3,551,595	-		Dshi_3378	0.72	-1.0
3,551,595	-		Dshi_3378	0.72	-0.2
3,551,595	-		Dshi_3378	0.72	+0.1
3,551,621	+		Dshi_3378	0.74	-0.0
3,551,621	+		Dshi_3378	0.74	+0.6
3,551,635	+		Dshi_3378	0.75	+0.4
3,551,635	-		Dshi_3378	0.75	+0.3
3,551,645	+		Dshi_3378	0.76	+0.8
3,551,653	-		Dshi_3378	0.76	+0.8
3,551,653	-		Dshi_3378	0.76	+0.8
3,551,660	+		Dshi_3378	0.77	-0.3
3,551,660	+		Dshi_3378	0.77	-1.4
3,551,668	-		Dshi_3378	0.77	-0.2
3,551,668	-		Dshi_3378	0.77	+1.4
3,551,668	-		Dshi_3378	0.77	+0.4
3,551,686	+		Dshi_3378	0.78	+1.7
3,551,699	+		Dshi_3378	0.79	+0.2
3,551,707	-		Dshi_3378	0.80	+0.3
3,551,707	-		Dshi_3378	0.80	-1.5
3,551,717	-		Dshi_3378	0.81	+0.8
3,551,761	+		Dshi_3378	0.84	+0.1
3,551,761	+		Dshi_3378	0.84	+0.5
3,551,761	+		Dshi_3378	0.84	+0.2
3,551,761	+		Dshi_3378	0.84	+0.9
3,551,765	-		Dshi_3378	0.84	+0.1
3,551,769	-		Dshi_3378	0.84	+0.6
3,551,775	-		Dshi_3378	0.84	-1.1
3,551,847	-		Dshi_3378	0.89	+0.4
3,551,863	+				-0.6
3,551,872	+				+0.0
3,551,872	+				-0.3
3,551,872	+				+1.0
3,551,880	-				-0.2
3,551,880	-				+0.5
3,551,880	-				-0.2
3,551,880	-				+0.7
3,551,880	-				+0.4
3,551,880	-				+0.1
3,551,881	-				+0.3
3,551,881	-				+0.0
3,551,891	+				+0.5
3,551,891	-				+0.1
3,551,899	-				-0.6
3,551,899	-				-0.7
3,551,899	-				+0.5
3,551,920	+				+0.6
3,551,960	+				+0.6
3,551,968	-				+0.2
3,551,982	+				-0.2
3,551,996	+				+2.0
3,552,015	-				+0.0
3,552,020	+				-0.8
3,552,020	+				+1.2
3,552,028	-				+0.5
3,552,059	+				+0.3
3,552,067	-				+1.2
3,552,098	+				+0.5
3,552,117	+				+0.4
3,552,150	+		Dshi_3379	0.10	+0.5
3,552,219	-		Dshi_3379	0.16	-0.6
3,552,232	+		Dshi_3379	0.17	+1.2
3,552,235	-		Dshi_3379	0.17	+1.5
3,552,247	+		Dshi_3379	0.18	-0.5
3,552,247	+		Dshi_3379	0.18	-0.2
3,552,247	+		Dshi_3379	0.18	+0.4
3,552,255	-		Dshi_3379	0.18	-0.5
3,552,255	-		Dshi_3379	0.18	+1.1
3,552,255	-		Dshi_3379	0.18	+0.2
3,552,263	-		Dshi_3379	0.19	+1.1
3,552,272	-		Dshi_3379	0.20	+0.3
3,552,291	+		Dshi_3379	0.21	-0.3
3,552,291	+		Dshi_3379	0.21	+0.4
3,552,296	-		Dshi_3379	0.21	+0.2
3,552,299	-		Dshi_3379	0.22	+0.5
3,552,299	-		Dshi_3379	0.22	+0.2
3,552,314	+		Dshi_3379	0.23	-1.6
3,552,324	-		Dshi_3379	0.24	+0.7
3,552,335	+		Dshi_3379	0.24	+0.0
3,552,359	+		Dshi_3379	0.26	-0.4
3,552,359	-		Dshi_3379	0.26	-0.5
3,552,413	+		Dshi_3379	0.30	-0.2
3,552,418	+		Dshi_3379	0.31	-1.6
3,552,431	-		Dshi_3379	0.32	+1.7
3,552,498	-		Dshi_3379	0.37	+1.2
3,552,500	-		Dshi_3379	0.37	-0.1
3,552,536	+		Dshi_3379	0.40	+0.5
3,552,561	-		Dshi_3379	0.42	-0.5
3,552,616	-		Dshi_3379	0.46	-2.2
3,552,633	-		Dshi_3379	0.47	+0.6
3,552,640	+		Dshi_3379	0.48	+0.1
3,552,649	-		Dshi_3379	0.49	+0.8
3,552,649	-		Dshi_3379	0.49	+0.7
3,552,649	-		Dshi_3379	0.49	+0.8
3,552,654	-		Dshi_3379	0.49	-1.3
3,552,654	-		Dshi_3379	0.49	-0.2
3,552,657	+		Dshi_3379	0.49	+0.4
3,552,657	-		Dshi_3379	0.49	-0.1
3,552,669	-		Dshi_3379	0.50	+1.3
3,552,670	+		Dshi_3379	0.50	+0.9
3,552,672	+		Dshi_3379	0.50	+0.1
3,552,672	+		Dshi_3379	0.50	+0.4
3,552,678	-		Dshi_3379	0.51	-0.3
3,552,680	-		Dshi_3379	0.51	+2.7
3,552,685	+		Dshi_3379	0.51	+0.2
3,552,685	+		Dshi_3379	0.51	+0.7
3,552,693	-		Dshi_3379	0.52	+0.8
3,552,704	-		Dshi_3379	0.53	+0.0
3,552,714	-		Dshi_3379	0.53	+1.2
3,552,792	+		Dshi_3379	0.59	+1.2
3,552,794	-		Dshi_3379	0.60	+1.2
3,552,800	-		Dshi_3379	0.60	+0.3
3,552,831	+		Dshi_3379	0.62	-0.0
3,552,837	+		Dshi_3379	0.63	-0.1
3,552,839	-		Dshi_3379	0.63	+0.1
3,552,860	-		Dshi_3379	0.65	-1.3
3,552,893	+		Dshi_3379	0.67	+0.6
3,552,919	+		Dshi_3379	0.69	+0.8
3,552,991	+		Dshi_3379	0.75	+0.3
3,552,991	+		Dshi_3379	0.75	+0.5
3,552,998	-		Dshi_3379	0.75	+0.4
3,552,999	-		Dshi_3379	0.75	+0.4