Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2780

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2778 and Dshi_2779 are separated by 179 nucleotidesDshi_2779 and Dshi_2780 are separated by 69 nucleotidesDshi_2780 and Dshi_2781 are separated by 326 nucleotidesDshi_2781 and Dshi_2782 are separated by 132 nucleotides Dshi_2778: Dshi_2778 - hypothetical protein (RefSeq), at 2,940,224 to 2,940,442 _2778 Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344 _2779 Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887 _2780 Dshi_2781: Dshi_2781 - ribosomal protein L33 (RefSeq), at 2,942,214 to 2,942,381 _2781 Dshi_2782: Dshi_2782 - PAS fold-4 domain protein (RefSeq), at 2,942,514 to 2,943,002 _2782 Position (kb) 2941 2942Strain fitness (log2 ratio) -1 0 1at 2940.419 kb on - strand, within Dshi_2778at 2940.520 kb on + strandat 2940.533 kb on + strandat 2940.803 kb on - strand, within Dshi_2779at 2941.075 kb on + strand, within Dshi_2779at 2941.174 kb on + strand, within Dshi_2779at 2941.453 kb on + strandat 2941.485 kb on - strand, within Dshi_2780at 2941.871 kb on + strandat 2941.920 kb on - strandat 2941.956 kb on + strandat 2942.753 kb on + strand, within Dshi_2782

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,940,419 - Dshi_2778 0.89 +0.4
2,940,520 + -0.4
2,940,533 + +0.0
2,940,803 - Dshi_2779 0.25 -0.2
2,941,075 + Dshi_2779 0.63 -0.2
2,941,174 + Dshi_2779 0.76 -0.0
2,941,453 + +0.3
2,941,485 - Dshi_2780 0.15 -0.9
2,941,871 + -0.3
2,941,920 - +0.4
2,941,956 + +0.1
2,942,753 + Dshi_2782 0.49 +0.4

Or see this region's nucleotide sequence