Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2778 and Dshi_2779 are separated by 179 nucleotides Dshi_2779 and Dshi_2780 are separated by 69 nucleotides Dshi_2780 and Dshi_2781 are separated by 326 nucleotides Dshi_2781 and Dshi_2782 are separated by 132 nucleotides
Dshi_2778: Dshi_2778 - hypothetical protein (RefSeq), at 2,940,224 to 2,940,442
_2778
Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344
_2779
Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887
_2780
Dshi_2781: Dshi_2781 - ribosomal protein L33 (RefSeq), at 2,942,214 to 2,942,381
_2781
Dshi_2782: Dshi_2782 - PAS fold-4 domain protein (RefSeq), at 2,942,514 to 2,943,002
_2782
Position (kb)
2941
2942 Strain fitness (log2 ratio)
-1
0
1 at 2940.419 kb on - strand, within Dshi_2778 at 2940.520 kb on + strand at 2940.533 kb on + strand at 2940.803 kb on - strand, within Dshi_2779 at 2941.075 kb on + strand, within Dshi_2779 at 2941.174 kb on + strand, within Dshi_2779 at 2941.453 kb on + strand at 2941.485 kb on - strand, within Dshi_2780 at 2941.871 kb on + strand at 2941.920 kb on - strand at 2941.956 kb on + strand at 2942.753 kb on + strand, within Dshi_2782
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 2,940,419 - Dshi_2778 0.89 +0.4 2,940,520 + -0.4 2,940,533 + +0.0 2,940,803 - Dshi_2779 0.25 -0.2 2,941,075 + Dshi_2779 0.63 -0.2 2,941,174 + Dshi_2779 0.76 -0.0 2,941,453 + +0.3 2,941,485 - Dshi_2780 0.15 -0.9 2,941,871 + -0.3 2,941,920 - +0.4 2,941,956 + +0.1 2,942,753 + Dshi_2782 0.49 +0.4
Or see this region's nucleotide sequence