Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0031

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0029 and Dshi_0030 are separated by 11 nucleotidesDshi_0030 and Dshi_0031 are separated by 35 nucleotidesDshi_0031 and Dshi_0032 overlap by 1 nucleotides Dshi_0029: Dshi_0029 - protein of unknown function DUF1159 (RefSeq), at 32,995 to 33,507 _0029 Dshi_0030: Dshi_0030 - thiol-disulfide oxidoreductase D, putative (RefSeq), at 33,519 to 34,190 _0030 Dshi_0031: Dshi_0031 - tetraacyldisaccharide 4'-kinase (RefSeq), at 34,226 to 35,239 _0031 Dshi_0032: Dshi_0032 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein (RefSeq), at 35,239 to 36,555 _0032 Position (kb) 34 35 36Strain fitness (log2 ratio) -1 0 1at 33.586 kb on - strandat 33.601 kb on - strand, within Dshi_0030at 33.717 kb on + strand, within Dshi_0030at 33.759 kb on - strand, within Dshi_0030at 33.853 kb on + strand, within Dshi_0030at 33.854 kb on + strand, within Dshi_0030at 33.863 kb on - strand, within Dshi_0030at 34.060 kb on + strand, within Dshi_0030at 34.071 kb on - strand, within Dshi_0030

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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33,586 - -1.2
33,601 - Dshi_0030 0.12 -0.7
33,717 + Dshi_0030 0.29 -0.0
33,759 - Dshi_0030 0.36 -0.5
33,853 + Dshi_0030 0.50 +1.0
33,854 + Dshi_0030 0.50 -0.7
33,863 - Dshi_0030 0.51 +1.1
34,060 + Dshi_0030 0.81 -1.7
34,071 - Dshi_0030 0.82 +0.5

Or see this region's nucleotide sequence