Experiment: m.b. pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_636 and HP15_637 are separated by 191 nucleotides HP15_637 and HP15_638 are separated by 435 nucleotides
HP15_636: HP15_636 - GTP-binding protein, ribosome biogenesis, YlqF, at 658,013 to 658,951
_636
HP15_637: HP15_637 - conserved hypothetical protein, secreted, at 659,143 to 659,658
_637
HP15_638: HP15_638 - integral membrane protein, at 660,094 to 662,580
_638
Position (kb) 659
660 Strain fitness (log2 ratio) -1
0
1 at 659.231 kb on + strand, within HP15_637 at 659.231 kb on + strand, within HP15_637 at 659.471 kb on - strand, within HP15_637 at 659.524 kb on + strand, within HP15_637 at 659.551 kb on - strand, within HP15_637 at 659.661 kb on - strand at 659.692 kb on - strand at 659.757 kb on - strand at 659.765 kb on - strand at 659.845 kb on + strand at 659.955 kb on + strand at 659.955 kb on + strand at 659.962 kb on - strand at 659.963 kb on - strand at 659.963 kb on - strand at 659.963 kb on - strand at 659.963 kb on - strand at 660.038 kb on + strand at 660.038 kb on + strand at 660.038 kb on + strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.058 kb on + strand at 660.091 kb on + strand at 660.093 kb on + strand at 660.113 kb on + strand at 660.172 kb on - strand at 660.359 kb on - strand, within HP15_638 at 660.434 kb on - strand, within HP15_638 at 660.448 kb on - strand, within HP15_638
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH9 remove 659,231 + HP15_637 0.17 +0.7 659,231 + HP15_637 0.17 -0.8 659,471 - HP15_637 0.64 -0.6 659,524 + HP15_637 0.74 +0.2 659,551 - HP15_637 0.79 +0.2 659,661 - +0.2 659,692 - -0.4 659,757 - +0.1 659,765 - +0.2 659,845 + +0.1 659,955 + -0.5 659,955 + +0.1 659,962 - +1.3 659,963 - +0.3 659,963 - -0.2 659,963 - -0.7 659,963 - -0.1 660,038 + -0.1 660,038 + -0.2 660,038 + -0.3 660,046 - +0.0 660,046 - +0.7 660,046 - -0.6 660,046 - +0.7 660,046 - -0.1 660,058 + +0.6 660,091 + -0.2 660,093 + -1.4 660,113 + -0.3 660,172 - -0.3 660,359 - HP15_638 0.11 +0.3 660,434 - HP15_638 0.14 +0.3 660,448 - HP15_638 0.14 +0.3
Or see this region's nucleotide sequence