Strain Fitness in Marinobacter adhaerens HP15 around HP15_4095

Experiment: m.b. pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4094 and HP15_4095 are separated by 248 nucleotidesHP15_4095 and HP15_4096 overlap by 1 nucleotidesHP15_4096 and HP15_4097 are separated by 1 nucleotides HP15_4094: HP15_4094 - enoyl-CoA hydratase/isomerase, at 4,328,406 to 4,329,200 _4094 HP15_4095: HP15_4095 - branched-chain amino acid ABC transporter, ATP-binding protein, at 4,329,449 to 4,330,264 _4095 HP15_4096: HP15_4096 - inner-membrane translocator, at 4,330,264 to 4,331,142 _4096 HP15_4097: HP15_4097 - inner-membrane translocator, at 4,331,144 to 4,332,187 _4097 Position (kb) 4329 4330 4331Strain fitness (log2 ratio) -1 0 1at 4328.506 kb on + strand, within HP15_4094at 4328.506 kb on + strand, within HP15_4094at 4328.514 kb on - strand, within HP15_4094at 4328.514 kb on - strand, within HP15_4094at 4328.541 kb on - strand, within HP15_4094at 4328.552 kb on - strand, within HP15_4094at 4328.579 kb on - strand, within HP15_4094at 4328.579 kb on - strand, within HP15_4094at 4328.585 kb on - strand, within HP15_4094at 4328.771 kb on - strand, within HP15_4094at 4328.847 kb on + strand, within HP15_4094at 4328.848 kb on - strand, within HP15_4094at 4328.848 kb on - strand, within HP15_4094at 4328.872 kb on + strand, within HP15_4094at 4328.872 kb on + strand, within HP15_4094at 4328.945 kb on - strand, within HP15_4094at 4328.977 kb on - strand, within HP15_4094at 4328.999 kb on - strand, within HP15_4094at 4329.038 kb on - strand, within HP15_4094at 4329.117 kb on + strand, within HP15_4094at 4329.117 kb on + strand, within HP15_4094at 4329.244 kb on - strandat 4329.286 kb on - strandat 4329.433 kb on - strandat 4329.619 kb on - strand, within HP15_4095at 4329.638 kb on + strand, within HP15_4095at 4329.657 kb on + strand, within HP15_4095at 4329.660 kb on - strand, within HP15_4095at 4329.680 kb on + strand, within HP15_4095at 4329.680 kb on + strand, within HP15_4095at 4329.689 kb on - strand, within HP15_4095at 4329.718 kb on + strand, within HP15_4095at 4329.718 kb on + strand, within HP15_4095at 4329.726 kb on - strand, within HP15_4095at 4329.744 kb on + strand, within HP15_4095at 4329.752 kb on - strand, within HP15_4095at 4329.752 kb on - strand, within HP15_4095at 4329.752 kb on - strand, within HP15_4095at 4329.775 kb on - strand, within HP15_4095at 4329.784 kb on + strand, within HP15_4095at 4329.789 kb on + strand, within HP15_4095at 4329.792 kb on - strand, within HP15_4095at 4329.851 kb on - strand, within HP15_4095at 4329.920 kb on + strand, within HP15_4095at 4329.931 kb on + strand, within HP15_4095at 4330.060 kb on - strand, within HP15_4095at 4330.084 kb on + strand, within HP15_4095at 4330.090 kb on + strand, within HP15_4095at 4330.126 kb on + strand, within HP15_4095at 4330.177 kb on - strand, within HP15_4095at 4330.177 kb on - strand, within HP15_4095at 4330.179 kb on + strand, within HP15_4095at 4330.187 kb on - strandat 4330.194 kb on + strandat 4330.195 kb on + strandat 4330.237 kb on + strandat 4330.333 kb on + strandat 4330.417 kb on + strand, within HP15_4096at 4330.484 kb on + strand, within HP15_4096at 4330.553 kb on - strand, within HP15_4096at 4330.679 kb on - strand, within HP15_4096at 4330.682 kb on - strand, within HP15_4096at 4330.833 kb on + strand, within HP15_4096at 4330.857 kb on - strand, within HP15_4096at 4330.872 kb on + strand, within HP15_4096at 4331.038 kb on - strand, within HP15_4096at 4331.053 kb on - strand, within HP15_4096at 4331.144 kb on - strandat 4331.157 kb on + strandat 4331.222 kb on + strandat 4331.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH9
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4,328,506 + HP15_4094 0.13 +0.3
4,328,506 + HP15_4094 0.13 -0.3
4,328,514 - HP15_4094 0.14 -0.1
4,328,514 - HP15_4094 0.14 -0.2
4,328,541 - HP15_4094 0.17 +0.1
4,328,552 - HP15_4094 0.18 +0.7
4,328,579 - HP15_4094 0.22 +0.3
4,328,579 - HP15_4094 0.22 +1.1
4,328,585 - HP15_4094 0.23 +0.5
4,328,771 - HP15_4094 0.46 +0.9
4,328,847 + HP15_4094 0.55 +0.2
4,328,848 - HP15_4094 0.56 -0.0
4,328,848 - HP15_4094 0.56 -0.2
4,328,872 + HP15_4094 0.59 +0.2
4,328,872 + HP15_4094 0.59 +0.3
4,328,945 - HP15_4094 0.68 +0.0
4,328,977 - HP15_4094 0.72 +0.3
4,328,999 - HP15_4094 0.75 +0.5
4,329,038 - HP15_4094 0.79 +0.3
4,329,117 + HP15_4094 0.89 +0.2
4,329,117 + HP15_4094 0.89 -0.8
4,329,244 - +0.6
4,329,286 - +0.4
4,329,433 - -0.9
4,329,619 - HP15_4095 0.21 -0.6
4,329,638 + HP15_4095 0.23 +0.5
4,329,657 + HP15_4095 0.25 -0.2
4,329,660 - HP15_4095 0.26 +0.7
4,329,680 + HP15_4095 0.28 +0.2
4,329,680 + HP15_4095 0.28 +1.0
4,329,689 - HP15_4095 0.29 +0.4
4,329,718 + HP15_4095 0.33 -0.2
4,329,718 + HP15_4095 0.33 -0.6
4,329,726 - HP15_4095 0.34 +0.2
4,329,744 + HP15_4095 0.36 +0.9
4,329,752 - HP15_4095 0.37 +0.8
4,329,752 - HP15_4095 0.37 +1.0
4,329,752 - HP15_4095 0.37 +1.0
4,329,775 - HP15_4095 0.40 -0.1
4,329,784 + HP15_4095 0.41 +0.3
4,329,789 + HP15_4095 0.42 +0.1
4,329,792 - HP15_4095 0.42 -0.0
4,329,851 - HP15_4095 0.49 +0.7
4,329,920 + HP15_4095 0.58 +0.9
4,329,931 + HP15_4095 0.59 -0.2
4,330,060 - HP15_4095 0.75 -0.0
4,330,084 + HP15_4095 0.78 -0.2
4,330,090 + HP15_4095 0.79 -0.2
4,330,126 + HP15_4095 0.83 +0.7
4,330,177 - HP15_4095 0.89 +0.2
4,330,177 - HP15_4095 0.89 +0.6
4,330,179 + HP15_4095 0.89 +1.2
4,330,187 - -0.8
4,330,194 + +0.3
4,330,195 + -0.2
4,330,237 + +0.4
4,330,333 + +0.3
4,330,417 + HP15_4096 0.17 +0.6
4,330,484 + HP15_4096 0.25 +0.8
4,330,553 - HP15_4096 0.33 +0.4
4,330,679 - HP15_4096 0.47 +0.2
4,330,682 - HP15_4096 0.48 -0.1
4,330,833 + HP15_4096 0.65 +0.7
4,330,857 - HP15_4096 0.67 -0.3
4,330,872 + HP15_4096 0.69 +0.3
4,331,038 - HP15_4096 0.88 -0.2
4,331,053 - HP15_4096 0.90 +1.3
4,331,144 - +0.8
4,331,157 + +0.2
4,331,222 + +1.0
4,331,227 - +0.7

Or see this region's nucleotide sequence