Experiment: m.b. pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4094 and HP15_4095 are separated by 248 nucleotides HP15_4095 and HP15_4096 overlap by 1 nucleotides HP15_4096 and HP15_4097 are separated by 1 nucleotides
HP15_4094: HP15_4094 - enoyl-CoA hydratase/isomerase, at 4,328,406 to 4,329,200
_4094
HP15_4095: HP15_4095 - branched-chain amino acid ABC transporter, ATP-binding protein, at 4,329,449 to 4,330,264
_4095
HP15_4096: HP15_4096 - inner-membrane translocator, at 4,330,264 to 4,331,142
_4096
HP15_4097: HP15_4097 - inner-membrane translocator, at 4,331,144 to 4,332,187
_4097
Position (kb)
4329
4330
4331 Strain fitness (log2 ratio)
-1
0
1 at 4328.506 kb on + strand, within HP15_4094 at 4328.506 kb on + strand, within HP15_4094 at 4328.514 kb on - strand, within HP15_4094 at 4328.514 kb on - strand, within HP15_4094 at 4328.541 kb on - strand, within HP15_4094 at 4328.552 kb on - strand, within HP15_4094 at 4328.579 kb on - strand, within HP15_4094 at 4328.579 kb on - strand, within HP15_4094 at 4328.585 kb on - strand, within HP15_4094 at 4328.771 kb on - strand, within HP15_4094 at 4328.847 kb on + strand, within HP15_4094 at 4328.848 kb on - strand, within HP15_4094 at 4328.848 kb on - strand, within HP15_4094 at 4328.872 kb on + strand, within HP15_4094 at 4328.872 kb on + strand, within HP15_4094 at 4328.945 kb on - strand, within HP15_4094 at 4328.977 kb on - strand, within HP15_4094 at 4328.999 kb on - strand, within HP15_4094 at 4329.038 kb on - strand, within HP15_4094 at 4329.117 kb on + strand, within HP15_4094 at 4329.117 kb on + strand, within HP15_4094 at 4329.244 kb on - strand at 4329.286 kb on - strand at 4329.433 kb on - strand at 4329.619 kb on - strand, within HP15_4095 at 4329.638 kb on + strand, within HP15_4095 at 4329.657 kb on + strand, within HP15_4095 at 4329.660 kb on - strand, within HP15_4095 at 4329.680 kb on + strand, within HP15_4095 at 4329.680 kb on + strand, within HP15_4095 at 4329.689 kb on - strand, within HP15_4095 at 4329.718 kb on + strand, within HP15_4095 at 4329.718 kb on + strand, within HP15_4095 at 4329.726 kb on - strand, within HP15_4095 at 4329.744 kb on + strand, within HP15_4095 at 4329.752 kb on - strand, within HP15_4095 at 4329.752 kb on - strand, within HP15_4095 at 4329.752 kb on - strand, within HP15_4095 at 4329.775 kb on - strand, within HP15_4095 at 4329.784 kb on + strand, within HP15_4095 at 4329.789 kb on + strand, within HP15_4095 at 4329.792 kb on - strand, within HP15_4095 at 4329.851 kb on - strand, within HP15_4095 at 4329.920 kb on + strand, within HP15_4095 at 4329.931 kb on + strand, within HP15_4095 at 4330.060 kb on - strand, within HP15_4095 at 4330.084 kb on + strand, within HP15_4095 at 4330.090 kb on + strand, within HP15_4095 at 4330.126 kb on + strand, within HP15_4095 at 4330.177 kb on - strand, within HP15_4095 at 4330.177 kb on - strand, within HP15_4095 at 4330.179 kb on + strand, within HP15_4095 at 4330.187 kb on - strand at 4330.194 kb on + strand at 4330.195 kb on + strand at 4330.237 kb on + strand at 4330.333 kb on + strand at 4330.417 kb on + strand, within HP15_4096 at 4330.484 kb on + strand, within HP15_4096 at 4330.553 kb on - strand, within HP15_4096 at 4330.679 kb on - strand, within HP15_4096 at 4330.682 kb on - strand, within HP15_4096 at 4330.833 kb on + strand, within HP15_4096 at 4330.857 kb on - strand, within HP15_4096 at 4330.872 kb on + strand, within HP15_4096 at 4331.038 kb on - strand, within HP15_4096 at 4331.053 kb on - strand, within HP15_4096 at 4331.144 kb on - strand at 4331.157 kb on + strand at 4331.222 kb on + strand at 4331.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH9 remove 4,328,506 + HP15_4094 0.13 +0.3 4,328,506 + HP15_4094 0.13 -0.3 4,328,514 - HP15_4094 0.14 -0.1 4,328,514 - HP15_4094 0.14 -0.2 4,328,541 - HP15_4094 0.17 +0.1 4,328,552 - HP15_4094 0.18 +0.7 4,328,579 - HP15_4094 0.22 +0.3 4,328,579 - HP15_4094 0.22 +1.1 4,328,585 - HP15_4094 0.23 +0.5 4,328,771 - HP15_4094 0.46 +0.9 4,328,847 + HP15_4094 0.55 +0.2 4,328,848 - HP15_4094 0.56 -0.0 4,328,848 - HP15_4094 0.56 -0.2 4,328,872 + HP15_4094 0.59 +0.2 4,328,872 + HP15_4094 0.59 +0.3 4,328,945 - HP15_4094 0.68 +0.0 4,328,977 - HP15_4094 0.72 +0.3 4,328,999 - HP15_4094 0.75 +0.5 4,329,038 - HP15_4094 0.79 +0.3 4,329,117 + HP15_4094 0.89 +0.2 4,329,117 + HP15_4094 0.89 -0.8 4,329,244 - +0.6 4,329,286 - +0.4 4,329,433 - -0.9 4,329,619 - HP15_4095 0.21 -0.6 4,329,638 + HP15_4095 0.23 +0.5 4,329,657 + HP15_4095 0.25 -0.2 4,329,660 - HP15_4095 0.26 +0.7 4,329,680 + HP15_4095 0.28 +0.2 4,329,680 + HP15_4095 0.28 +1.0 4,329,689 - HP15_4095 0.29 +0.4 4,329,718 + HP15_4095 0.33 -0.2 4,329,718 + HP15_4095 0.33 -0.6 4,329,726 - HP15_4095 0.34 +0.2 4,329,744 + HP15_4095 0.36 +0.9 4,329,752 - HP15_4095 0.37 +0.8 4,329,752 - HP15_4095 0.37 +1.0 4,329,752 - HP15_4095 0.37 +1.0 4,329,775 - HP15_4095 0.40 -0.1 4,329,784 + HP15_4095 0.41 +0.3 4,329,789 + HP15_4095 0.42 +0.1 4,329,792 - HP15_4095 0.42 -0.0 4,329,851 - HP15_4095 0.49 +0.7 4,329,920 + HP15_4095 0.58 +0.9 4,329,931 + HP15_4095 0.59 -0.2 4,330,060 - HP15_4095 0.75 -0.0 4,330,084 + HP15_4095 0.78 -0.2 4,330,090 + HP15_4095 0.79 -0.2 4,330,126 + HP15_4095 0.83 +0.7 4,330,177 - HP15_4095 0.89 +0.2 4,330,177 - HP15_4095 0.89 +0.6 4,330,179 + HP15_4095 0.89 +1.2 4,330,187 - -0.8 4,330,194 + +0.3 4,330,195 + -0.2 4,330,237 + +0.4 4,330,333 + +0.3 4,330,417 + HP15_4096 0.17 +0.6 4,330,484 + HP15_4096 0.25 +0.8 4,330,553 - HP15_4096 0.33 +0.4 4,330,679 - HP15_4096 0.47 +0.2 4,330,682 - HP15_4096 0.48 -0.1 4,330,833 + HP15_4096 0.65 +0.7 4,330,857 - HP15_4096 0.67 -0.3 4,330,872 + HP15_4096 0.69 +0.3 4,331,038 - HP15_4096 0.88 -0.2 4,331,053 - HP15_4096 0.90 +1.3 4,331,144 - +0.8 4,331,157 + +0.2 4,331,222 + +1.0 4,331,227 - +0.7
Or see this region's nucleotide sequence