Strain Fitness in Marinobacter adhaerens HP15 around HP15_2478

Experiment: m.b. pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2476 and HP15_2477 are separated by 244 nucleotidesHP15_2477 and HP15_2478 are separated by 89 nucleotidesHP15_2478 and HP15_2479 are separated by 241 nucleotides HP15_2476: HP15_2476 - conserved hypothetical protein, at 2,616,812 to 2,617,084 _2476 HP15_2477: HP15_2477 - endonuclease I, at 2,617,329 to 2,617,907 _2477 HP15_2478: HP15_2478 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 2,617,997 to 2,619,757 _2478 HP15_2479: HP15_2479 - acyl-CoA dehydrogenase family protein, at 2,619,999 to 2,621,870 _2479 Position (kb) 2617 2618 2619 2620Strain fitness (log2 ratio) -2 -1 0 1at 2617.031 kb on - strand, within HP15_2476at 2617.087 kb on + strandat 2617.095 kb on - strandat 2617.299 kb on + strandat 2617.307 kb on - strandat 2617.326 kb on - strandat 2617.382 kb on + strandat 2617.390 kb on - strand, within HP15_2477at 2617.424 kb on + strand, within HP15_2477at 2617.500 kb on + strand, within HP15_2477at 2617.525 kb on + strand, within HP15_2477at 2617.578 kb on + strand, within HP15_2477at 2617.730 kb on + strand, within HP15_2477at 2617.747 kb on + strand, within HP15_2477at 2617.755 kb on - strand, within HP15_2477at 2617.788 kb on + strand, within HP15_2477at 2617.788 kb on + strand, within HP15_2477at 2617.798 kb on + strand, within HP15_2477at 2617.806 kb on - strand, within HP15_2477at 2617.806 kb on - strand, within HP15_2477at 2617.908 kb on - strandat 2618.013 kb on - strandat 2618.103 kb on + strandat 2618.103 kb on + strandat 2618.217 kb on - strand, within HP15_2478at 2618.375 kb on + strand, within HP15_2478at 2618.405 kb on - strand, within HP15_2478at 2618.501 kb on + strand, within HP15_2478at 2618.708 kb on - strand, within HP15_2478at 2618.799 kb on - strand, within HP15_2478at 2618.799 kb on - strand, within HP15_2478at 2618.858 kb on + strand, within HP15_2478at 2618.858 kb on + strand, within HP15_2478at 2618.866 kb on - strand, within HP15_2478at 2619.110 kb on + strand, within HP15_2478at 2619.140 kb on + strand, within HP15_2478at 2619.181 kb on + strand, within HP15_2478at 2619.292 kb on + strand, within HP15_2478at 2619.318 kb on + strand, within HP15_2478at 2619.318 kb on + strand, within HP15_2478at 2619.362 kb on - strand, within HP15_2478at 2619.462 kb on + strand, within HP15_2478at 2619.619 kb on - strandat 2619.641 kb on - strandat 2619.704 kb on - strandat 2619.864 kb on + strandat 2620.119 kb on - strandat 2620.119 kb on - strandat 2620.139 kb on + strandat 2620.164 kb on + strandat 2620.264 kb on - strand, within HP15_2479at 2620.395 kb on + strand, within HP15_2479at 2620.411 kb on + strand, within HP15_2479at 2620.419 kb on - strand, within HP15_2479at 2620.539 kb on + strand, within HP15_2479at 2620.557 kb on - strand, within HP15_2479at 2620.572 kb on - strand, within HP15_2479at 2620.663 kb on - strand, within HP15_2479

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH9
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2,617,031 - HP15_2476 0.80 -0.0
2,617,087 + -0.7
2,617,095 - -0.1
2,617,299 + -0.9
2,617,307 - +1.4
2,617,326 - -1.2
2,617,382 + -0.8
2,617,390 - HP15_2477 0.11 -0.0
2,617,424 + HP15_2477 0.16 -0.3
2,617,500 + HP15_2477 0.30 +0.3
2,617,525 + HP15_2477 0.34 -0.2
2,617,578 + HP15_2477 0.43 -0.2
2,617,730 + HP15_2477 0.69 +0.6
2,617,747 + HP15_2477 0.72 +0.9
2,617,755 - HP15_2477 0.74 +1.1
2,617,788 + HP15_2477 0.79 -0.6
2,617,788 + HP15_2477 0.79 -1.4
2,617,798 + HP15_2477 0.81 +0.2
2,617,806 - HP15_2477 0.82 +0.2
2,617,806 - HP15_2477 0.82 -1.0
2,617,908 - -0.1
2,618,013 - -0.5
2,618,103 + -1.1
2,618,103 + -0.4
2,618,217 - HP15_2478 0.12 -0.9
2,618,375 + HP15_2478 0.21 -1.1
2,618,405 - HP15_2478 0.23 -1.1
2,618,501 + HP15_2478 0.29 -0.1
2,618,708 - HP15_2478 0.40 -0.5
2,618,799 - HP15_2478 0.46 +0.1
2,618,799 - HP15_2478 0.46 -1.3
2,618,858 + HP15_2478 0.49 -2.3
2,618,858 + HP15_2478 0.49 -0.6
2,618,866 - HP15_2478 0.49 -2.1
2,619,110 + HP15_2478 0.63 -0.3
2,619,140 + HP15_2478 0.65 -2.3
2,619,181 + HP15_2478 0.67 -0.1
2,619,292 + HP15_2478 0.74 -0.3
2,619,318 + HP15_2478 0.75 -1.0
2,619,318 + HP15_2478 0.75 -0.4
2,619,362 - HP15_2478 0.78 -0.8
2,619,462 + HP15_2478 0.83 -0.6
2,619,619 - -1.0
2,619,641 - +0.6
2,619,704 - -1.0
2,619,864 + -0.8
2,620,119 - +0.2
2,620,119 - -1.0
2,620,139 + +0.2
2,620,164 + +0.5
2,620,264 - HP15_2479 0.14 +0.6
2,620,395 + HP15_2479 0.21 -0.3
2,620,411 + HP15_2479 0.22 -0.2
2,620,419 - HP15_2479 0.22 +0.7
2,620,539 + HP15_2479 0.29 +1.0
2,620,557 - HP15_2479 0.30 -0.1
2,620,572 - HP15_2479 0.31 +1.4
2,620,663 - HP15_2479 0.35 +0.5

Or see this region's nucleotide sequence