Strain Fitness in Marinobacter adhaerens HP15 around HP15_1994

Experiment: m.b. pH9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1992 and HP15_1993 are separated by 77 nucleotidesHP15_1993 and HP15_1994 are separated by 17 nucleotidesHP15_1994 and HP15_1995 are separated by 2 nucleotidesHP15_1995 and HP15_1996 overlap by 23 nucleotides HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061 _1992 HP15_1993: HP15_1993 - exonuclease RNase T and DNA polymerase III, at 2,101,139 to 2,101,711 _1993 HP15_1994: HP15_1994 - hypothetical protein, at 2,101,729 to 2,102,124 _1994 HP15_1995: HP15_1995 - hypothetical protein, at 2,102,127 to 2,102,468 _1995 HP15_1996: HP15_1996 - phage Gp37Gp68, at 2,102,446 to 2,103,525 _1996 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -3 -2 -1 0 1at 2100.848 kb on - strand, within HP15_1992at 2100.894 kb on - strand, within HP15_1992at 2101.014 kb on - strandat 2101.341 kb on + strand, within HP15_1993at 2101.355 kb on - strand, within HP15_1993at 2101.402 kb on - strand, within HP15_1993at 2101.412 kb on - strand, within HP15_1993at 2101.417 kb on - strand, within HP15_1993at 2101.502 kb on - strand, within HP15_1993at 2101.591 kb on - strand, within HP15_1993at 2101.670 kb on - strandat 2101.670 kb on - strandat 2101.670 kb on - strandat 2101.680 kb on - strandat 2101.773 kb on + strand, within HP15_1994at 2101.781 kb on - strand, within HP15_1994at 2101.799 kb on - strand, within HP15_1994at 2101.822 kb on - strand, within HP15_1994at 2101.927 kb on - strand, within HP15_1994at 2101.929 kb on - strand, within HP15_1994at 2101.971 kb on + strand, within HP15_1994at 2102.125 kb on - strandat 2102.200 kb on - strand, within HP15_1995at 2102.200 kb on - strand, within HP15_1995at 2102.200 kb on - strand, within HP15_1995at 2102.352 kb on - strand, within HP15_1995at 2102.426 kb on - strand, within HP15_1995at 2102.884 kb on - strand, within HP15_1996at 2103.005 kb on - strand, within HP15_1996at 2103.008 kb on + strand, within HP15_1996at 2103.022 kb on - strand, within HP15_1996at 2103.024 kb on - strand, within HP15_1996

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH9
remove
2,100,848 - HP15_1992 0.75 +0.2
2,100,894 - HP15_1992 0.81 -0.2
2,101,014 - -0.1
2,101,341 + HP15_1993 0.35 -0.4
2,101,355 - HP15_1993 0.38 +0.8
2,101,402 - HP15_1993 0.46 -0.0
2,101,412 - HP15_1993 0.48 -0.2
2,101,417 - HP15_1993 0.49 -0.2
2,101,502 - HP15_1993 0.63 +0.2
2,101,591 - HP15_1993 0.79 +0.9
2,101,670 - -0.3
2,101,670 - +1.1
2,101,670 - -0.2
2,101,680 - -0.3
2,101,773 + HP15_1994 0.11 +0.3
2,101,781 - HP15_1994 0.13 -1.2
2,101,799 - HP15_1994 0.18 +0.2
2,101,822 - HP15_1994 0.23 -1.0
2,101,927 - HP15_1994 0.50 -1.9
2,101,929 - HP15_1994 0.51 +0.5
2,101,971 + HP15_1994 0.61 -2.9
2,102,125 - +0.1
2,102,200 - HP15_1995 0.21 +0.1
2,102,200 - HP15_1995 0.21 +0.1
2,102,200 - HP15_1995 0.21 -0.0
2,102,352 - HP15_1995 0.66 -0.1
2,102,426 - HP15_1995 0.87 +0.4
2,102,884 - HP15_1996 0.41 -0.4
2,103,005 - HP15_1996 0.52 +0.1
2,103,008 + HP15_1996 0.52 +0.4
2,103,022 - HP15_1996 0.53 -1.0
2,103,024 - HP15_1996 0.54 +0.3

Or see this region's nucleotide sequence