Experiment: m.b. pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1992 and HP15_1993 are separated by 77 nucleotides HP15_1993 and HP15_1994 are separated by 17 nucleotides HP15_1994 and HP15_1995 are separated by 2 nucleotides HP15_1995 and HP15_1996 overlap by 23 nucleotides
HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061
_1992
HP15_1993: HP15_1993 - exonuclease RNase T and DNA polymerase III, at 2,101,139 to 2,101,711
_1993
HP15_1994: HP15_1994 - hypothetical protein, at 2,101,729 to 2,102,124
_1994
HP15_1995: HP15_1995 - hypothetical protein, at 2,102,127 to 2,102,468
_1995
HP15_1996: HP15_1996 - phage Gp37Gp68, at 2,102,446 to 2,103,525
_1996
Position (kb)
2101
2102
2103 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2100.848 kb on - strand, within HP15_1992 at 2100.894 kb on - strand, within HP15_1992 at 2101.014 kb on - strand at 2101.341 kb on + strand, within HP15_1993 at 2101.355 kb on - strand, within HP15_1993 at 2101.402 kb on - strand, within HP15_1993 at 2101.412 kb on - strand, within HP15_1993 at 2101.417 kb on - strand, within HP15_1993 at 2101.502 kb on - strand, within HP15_1993 at 2101.591 kb on - strand, within HP15_1993 at 2101.670 kb on - strand at 2101.670 kb on - strand at 2101.670 kb on - strand at 2101.680 kb on - strand at 2101.773 kb on + strand, within HP15_1994 at 2101.781 kb on - strand, within HP15_1994 at 2101.799 kb on - strand, within HP15_1994 at 2101.822 kb on - strand, within HP15_1994 at 2101.927 kb on - strand, within HP15_1994 at 2101.929 kb on - strand, within HP15_1994 at 2101.971 kb on + strand, within HP15_1994 at 2102.125 kb on - strand at 2102.200 kb on - strand, within HP15_1995 at 2102.200 kb on - strand, within HP15_1995 at 2102.200 kb on - strand, within HP15_1995 at 2102.352 kb on - strand, within HP15_1995 at 2102.426 kb on - strand, within HP15_1995 at 2102.884 kb on - strand, within HP15_1996 at 2103.005 kb on - strand, within HP15_1996 at 2103.008 kb on + strand, within HP15_1996 at 2103.022 kb on - strand, within HP15_1996 at 2103.024 kb on - strand, within HP15_1996
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH9 remove 2,100,848 - HP15_1992 0.75 +0.2 2,100,894 - HP15_1992 0.81 -0.2 2,101,014 - -0.1 2,101,341 + HP15_1993 0.35 -0.4 2,101,355 - HP15_1993 0.38 +0.8 2,101,402 - HP15_1993 0.46 -0.0 2,101,412 - HP15_1993 0.48 -0.2 2,101,417 - HP15_1993 0.49 -0.2 2,101,502 - HP15_1993 0.63 +0.2 2,101,591 - HP15_1993 0.79 +0.9 2,101,670 - -0.3 2,101,670 - +1.1 2,101,670 - -0.2 2,101,680 - -0.3 2,101,773 + HP15_1994 0.11 +0.3 2,101,781 - HP15_1994 0.13 -1.2 2,101,799 - HP15_1994 0.18 +0.2 2,101,822 - HP15_1994 0.23 -1.0 2,101,927 - HP15_1994 0.50 -1.9 2,101,929 - HP15_1994 0.51 +0.5 2,101,971 + HP15_1994 0.61 -2.9 2,102,125 - +0.1 2,102,200 - HP15_1995 0.21 +0.1 2,102,200 - HP15_1995 0.21 +0.1 2,102,200 - HP15_1995 0.21 -0.0 2,102,352 - HP15_1995 0.66 -0.1 2,102,426 - HP15_1995 0.87 +0.4 2,102,884 - HP15_1996 0.41 -0.4 2,103,005 - HP15_1996 0.52 +0.1 2,103,008 + HP15_1996 0.52 +0.4 2,103,022 - HP15_1996 0.53 -1.0 2,103,024 - HP15_1996 0.54 +0.3
Or see this region's nucleotide sequence