Strain Fitness in Shewanella amazonensis SB2B around Sama_1055

Experiment: Nickel (II) chloride 0.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 0.625 mM
1,275,487	-		Sama_1053	0.45	+0.5
1,275,487	-		Sama_1053	0.45	+0.4
1,275,487	-		Sama_1053	0.45	-0.0
1,275,492	+		Sama_1053	0.46	+1.2
1,275,493	-		Sama_1053	0.46	-0.6
1,275,493	-		Sama_1053	0.46	+0.0
1,275,493	-		Sama_1053	0.46	-0.1
1,275,506	-		Sama_1053	0.47	-1.2
1,275,616	+		Sama_1053	0.57	-0.2
1,275,622	+		Sama_1053	0.57	-0.1
1,275,623	-		Sama_1053	0.57	+1.2
1,275,623	-		Sama_1053	0.57	-0.1
1,275,671	+		Sama_1053	0.62	+0.4
1,275,671	+		Sama_1053	0.62	+1.7
1,275,671	+		Sama_1053	0.62	+1.7
1,275,671	+		Sama_1053	0.62	-0.3
1,275,672	-		Sama_1053	0.62	+0.3
1,275,672	-		Sama_1053	0.62	-0.1
1,275,672	-		Sama_1053	0.62	+0.0
1,275,672	-		Sama_1053	0.62	-0.2
1,275,672	-		Sama_1053	0.62	-0.0
1,275,672	-		Sama_1053	0.62	-0.5
1,275,672	-		Sama_1053	0.62	+1.1
1,275,726	-		Sama_1053	0.67	-0.6
1,275,746	+		Sama_1053	0.68	-0.0
1,275,746	+		Sama_1053	0.68	-1.4
1,275,747	-		Sama_1053	0.68	+0.3
1,275,752	+		Sama_1053	0.69	-1.5
1,275,752	+		Sama_1053	0.69	+0.4
1,275,752	+		Sama_1053	0.69	-0.9
1,275,752	+		Sama_1053	0.69	+0.1
1,275,753	-		Sama_1053	0.69	-0.6
1,275,754	+		Sama_1053	0.69	-0.2
1,275,754	+		Sama_1053	0.69	-0.5
1,275,754	+		Sama_1053	0.69	+0.9
1,275,754	+		Sama_1053	0.69	-2.3
1,275,754	+		Sama_1053	0.69	-0.4
1,275,754	+		Sama_1053	0.69	-1.6
1,275,754	+		Sama_1053	0.69	-1.5
1,275,755	-		Sama_1053	0.69	-0.1
1,275,755	-		Sama_1053	0.69	+0.3
1,275,755	-		Sama_1053	0.69	-0.7
1,275,755	-		Sama_1053	0.69	-0.1
1,276,015	-				-0.4
1,276,015	-				+0.1
1,276,015	-				+3.5
1,276,153	+				+0.1
1,276,153	+				-0.3
1,276,153	+				+1.9
1,276,153	+				+1.5
1,276,154	-				-0.3
1,276,156	+				+1.2
1,276,157	-				+0.8
1,276,176	+		Sama_1054	0.12	-0.8
1,276,177	-		Sama_1054	0.13	+0.1
1,276,223	+		Sama_1054	0.39	+0.6
1,276,223	+		Sama_1054	0.39	-2.2
1,276,223	+		Sama_1054	0.39	-0.3
1,276,225	+		Sama_1054	0.40	+1.3
1,276,225	+		Sama_1054	0.40	-0.5
1,276,225	+		Sama_1054	0.40	+0.9
1,276,225	+		Sama_1054	0.40	-0.2
1,276,225	+		Sama_1054	0.40	+0.4
1,276,225	+		Sama_1054	0.40	+0.3
1,276,225	+		Sama_1054	0.40	+0.6
1,276,225	+		Sama_1054	0.40	+0.3
1,276,225	+		Sama_1054	0.40	+1.1
1,276,225	+		Sama_1054	0.40	+0.1
1,276,225	+		Sama_1054	0.40	+0.6
1,276,226	-		Sama_1054	0.41	-0.7
1,276,226	-		Sama_1054	0.41	+0.9
1,276,226	-		Sama_1054	0.41	-0.2
1,276,226	-		Sama_1054	0.41	+0.6
1,276,226	-		Sama_1054	0.41	-0.0
1,276,226	-		Sama_1054	0.41	-0.1
1,276,226	-		Sama_1054	0.41	+0.6
1,276,226	-		Sama_1054	0.41	+0.1
1,276,226	-		Sama_1054	0.41	+0.1
1,276,226	-		Sama_1054	0.41	-0.4
1,276,226	-		Sama_1054	0.41	+0.2
1,276,226	-		Sama_1054	0.41	-0.0
1,276,226	-		Sama_1054	0.41	-0.4
1,276,226	-		Sama_1054	0.41	+0.5
1,276,232	-		Sama_1054	0.44	+0.2
1,276,265	+		Sama_1054	0.63	-1.3
1,276,342	+				+0.2
1,276,342	+				-0.4
1,276,343	-				-0.4
1,276,343	-				-0.4
1,276,345	+				+1.4
1,276,345	+				-0.8
1,276,346	-				+1.1
1,276,368	+				-0.1
1,276,368	+				+0.1
1,276,369	-				+1.4
1,276,389	+				+0.1
1,276,389	+				+0.1
1,276,389	+				+0.6
1,276,499	-				+0.1
1,276,516	-				+0.4
1,276,516	-				+0.1
1,276,606	+		Sama_1055	0.10	-0.3
1,276,607	-		Sama_1055	0.11	-0.7
1,276,607	-		Sama_1055	0.11	-0.3
1,276,643	-		Sama_1055	0.13	-1.2
1,276,643	-		Sama_1055	0.13	-0.9
1,276,656	-		Sama_1055	0.14	-0.6
1,276,656	-		Sama_1055	0.14	+0.4
1,276,756	+		Sama_1055	0.22	-0.9
1,276,757	-		Sama_1055	0.22	+0.3
1,276,757	-		Sama_1055	0.22	-0.3
1,276,757	-		Sama_1055	0.22	-0.4
1,276,757	-		Sama_1055	0.22	+0.1
1,276,757	-		Sama_1055	0.22	-0.4
1,276,757	-		Sama_1055	0.22	-1.1
1,276,758	+		Sama_1055	0.23	-0.2
1,276,759	-		Sama_1055	0.23	-0.7
1,276,759	-		Sama_1055	0.23	-2.9
1,276,759	-		Sama_1055	0.23	-0.4
1,276,759	-		Sama_1055	0.23	-1.9
1,276,759	-		Sama_1055	0.23	+0.6
1,276,759	-		Sama_1055	0.23	-2.3
1,276,759	-		Sama_1055	0.23	+0.6
1,276,769	-		Sama_1055	0.23	+0.4
1,276,769	-		Sama_1055	0.23	-0.7
1,276,822	-		Sama_1055	0.28	-1.0
1,276,826	-		Sama_1055	0.28	-0.6
1,276,881	+		Sama_1055	0.32	-0.2
1,276,882	-		Sama_1055	0.32	-0.0
1,277,007	-		Sama_1055	0.42	-2.4
1,277,038	-		Sama_1055	0.45	-0.4
1,277,049	-		Sama_1055	0.46	-0.8
1,277,049	-		Sama_1055	0.46	-0.4
1,277,049	-		Sama_1055	0.46	-0.4
1,277,049	-		Sama_1055	0.46	-0.4
1,277,049	-		Sama_1055	0.46	-0.7
1,277,071	-		Sama_1055	0.48	-0.6
1,277,071	-		Sama_1055	0.48	+0.3
1,277,150	+		Sama_1055	0.54	-1.3
1,277,151	-		Sama_1055	0.54	-0.8
1,277,180	-		Sama_1055	0.56	-1.6
1,277,220	-		Sama_1055	0.59	-0.5
1,277,220	-		Sama_1055	0.59	+0.3
1,277,286	-		Sama_1055	0.65	-0.0
1,277,345	-		Sama_1055	0.69	-0.1
1,277,373	-		Sama_1055	0.72	-1.2
1,277,512	+		Sama_1055	0.83	-0.6
1,277,513	-		Sama_1055	0.83	-0.4
1,277,513	-		Sama_1055	0.83	-0.9
1,277,542	+		Sama_1055	0.85	-0.1
1,277,543	-		Sama_1055	0.85	-0.6
1,277,543	-		Sama_1055	0.85	+0.7
1,277,599	+		Sama_1055	0.90	+1.0
1,277,600	-		Sama_1055	0.90	-0.5
1,277,600	-		Sama_1055	0.90	-1.0
1,277,660	+				+0.1
1,277,770	+				+0.6
1,277,857	+				-0.8
1,277,857	+				-0.4
1,277,857	+				-0.8
1,277,857	+				-0.1
1,277,857	+				-1.5
1,277,857	+				-0.2
1,277,857	+				-0.1
1,277,857	+				-0.5
1,277,858	-				+0.9
1,277,858	-				+1.3
1,277,858	-				+0.1
1,277,858	-				-0.3
1,277,858	-				+0.6
1,277,858	-				+0.1
1,277,858	-				+0.5
1,277,858	-				-0.6
1,277,858	-				-1.1
1,277,858	-				-0.7
1,277,858	-				-0.1
1,277,858	-				-0.0
1,277,860	-				-0.4
1,277,860	-				-1.4
1,277,860	-				-0.3
1,277,895	-				+0.5
1,277,896	+				-0.5
1,277,902	-				+0.7
1,277,916	-				+2.2
1,277,939	+				+0.3
1,277,943	+				-0.2
1,277,944	-				+1.1
1,277,944	-				+0.5
1,277,949	+				-0.1
1,277,949	+				+0.1
1,278,048	-		Sama_1056	0.17	-0.4
1,278,121	-		Sama_1056	0.35	+0.4
1,278,121	-		Sama_1056	0.35	+0.5
1,278,121	-		Sama_1056	0.35	+0.2
1,278,229	+		Sama_1056	0.60	-0.6
1,278,229	+		Sama_1056	0.60	-0.3
1,278,230	-		Sama_1056	0.61	+0.8
1,278,230	-		Sama_1056	0.61	+1.1
1,278,230	-		Sama_1056	0.61	-0.4
1,278,324	+		Sama_1056	0.83	-0.5
1,278,324	+		Sama_1056	0.83	-0.6
1,278,325	-		Sama_1056	0.83	+0.6
1,278,325	-		Sama_1056	0.83	+0.3
1,278,358	+				+0.8
1,278,371	+				-1.6
1,278,371	+				-0.6
1,278,371	+				-0.2
1,278,371	+				+0.5
1,278,404	+				-0.8
1,278,404	+				+0.0
1,278,404	+				+0.2
1,278,405	-				-0.2
1,278,439	+				+0.8
1,278,440	-				-0.7
1,278,452	+				-0.0
1,278,452	+				+1.2
1,278,466	+				-0.6
1,278,473	+				+0.3
1,278,477	+				-0.7
1,278,477	+				+0.6
1,278,477	+				+0.1
1,278,478	-				+0.1
1,278,478	-				-0.1
1,278,481	+				-0.7
1,278,481	+				-0.2
1,278,482	-				-1.1
1,278,482	-				-0.2
1,278,482	-				-0.7
1,278,487	+				-0.1
1,278,487	+				+0.1
1,278,487	+				-0.4
1,278,488	-				+0.1
1,278,499	+				-0.0
1,278,499	+				-0.4
1,278,500	-				+0.3
1,278,504	-				+0.2
1,278,504	-				-0.2
1,278,639	+				-0.6
1,278,640	-				-0.0
1,278,646	+				-0.0
1,278,646	+				-1.3
1,278,646	+				-0.3
1,278,646	+				-1.3
1,278,646	+				+0.1
1,278,647	-				+0.3
1,278,647	-				-0.6
1,278,684	-				-0.5
1,278,684	-				-1.0
1,278,684	-				-0.4