Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3911

Experiment: L-Glutamine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (C)
138,128	-				+0.6
138,132	+				-0.5
138,138	-				+1.0
138,154	+		Dshi_3909	0.11	-3.1
138,160	+		Dshi_3909	0.13	+0.3
138,160	+		Dshi_3909	0.13	-1.3
138,165	+		Dshi_3909	0.15	+0.4
138,189	-		Dshi_3909	0.24	+0.1
138,193	-		Dshi_3909	0.25	-0.1
138,197	-		Dshi_3909	0.27	-0.5
138,232	-		Dshi_3909	0.40	-0.3
138,253	+		Dshi_3909	0.47	-0.3
138,278	+		Dshi_3909	0.56	-1.1
138,313	-		Dshi_3909	0.69	-0.8
138,313	-		Dshi_3909	0.69	-0.1
138,315	+		Dshi_3909	0.70	-0.4
138,323	-		Dshi_3909	0.73	-0.1
138,344	-		Dshi_3909	0.81	+0.9
138,384	+				-0.3
138,392	+				-0.5
138,394	+				-1.3
138,395	+				-0.2
138,400	-				-1.6
138,402	-				-1.3
138,403	+				-0.7
138,403	+				+1.7
138,403	+				+0.4
138,403	+				-0.8
138,403	+				-0.4
138,403	+				-0.1
138,403	+				-0.5
138,403	+				-0.8
138,403	+				-1.1
138,403	+				-0.7
138,403	+				-0.6
138,403	-				-0.1
138,405	+				-1.0
138,407	+				-0.1
138,411	-				-0.7
138,411	-				-0.5
138,411	-				-2.7
138,411	-				-0.4
138,413	-				+0.5
138,413	-				-0.2
138,419	-				-0.9
138,424	-				-0.9
138,449	+				+0.4
138,449	+				-0.6
138,449	+				-0.3
138,449	+				-1.6
138,449	+				-0.5
138,457	-				-0.9
138,457	-				-0.8
138,457	-				+0.3
138,457	-				-0.6
138,484	+				-0.2
138,492	-				-0.1
138,549	-				-0.2
138,557	+				-0.1
138,587	-		Dshi_3910	0.15	+0.1
138,587	-		Dshi_3910	0.15	-1.3
138,594	-		Dshi_3910	0.17	-0.6
138,634	+		Dshi_3910	0.28	+0.0
138,660	+		Dshi_3910	0.35	+0.0
138,702	+		Dshi_3910	0.46	-0.3
138,711	+		Dshi_3910	0.48	+1.2
138,718	-		Dshi_3910	0.50	+0.0
138,719	-		Dshi_3910	0.50	-0.8
138,719	-		Dshi_3910	0.50	-0.2
138,719	-		Dshi_3910	0.50	-0.4
138,721	+		Dshi_3910	0.51	+0.0
138,721	+		Dshi_3910	0.51	+1.0
138,801	-		Dshi_3910	0.72	+1.2
138,810	-		Dshi_3910	0.74	-0.2
138,813	+		Dshi_3910	0.75	+0.9
138,855	-		Dshi_3910	0.86	-0.2
138,866	-		Dshi_3910	0.89	+0.6
138,891	+				-0.2
138,901	-				+0.3
138,903	+				-0.2
138,905	-				-1.9
138,923	-				-0.6
138,970	-				-0.7
138,970	-				-2.2
138,972	+				-0.4
138,972	+				+1.2
138,972	+				-0.4
138,972	+				+0.5
138,980	-				+0.0
138,980	-				-0.2
138,980	-				-0.2
138,980	-				-0.2
138,980	-				-1.0
138,980	-				-0.2
138,980	-				-0.8
138,980	-				-1.3
138,999	-				-1.0
139,025	+				-0.4
139,025	+				+0.7
139,033	-				+0.2
139,036	+				-0.6
139,036	+				+0.4
139,039	-				-1.2
139,051	-				+0.2
139,065	+				+0.9
139,086	+				-0.1
139,094	-				-0.0
139,120	+				-1.4
139,128	-				-1.1
139,128	-				-0.4
139,128	-				-0.1
139,136	-				+0.3
139,138	-				-0.5
139,150	-				-0.0
139,161	-				-1.3
139,234	-				-2.2
139,246	+		Dshi_3911	0.11	-2.1
139,328	-		Dshi_3911	0.16	-1.7
139,362	-		Dshi_3911	0.19	-0.3
139,372	-		Dshi_3911	0.19	-0.5
139,372	-		Dshi_3911	0.19	-0.3
139,374	-		Dshi_3911	0.19	+0.4
139,399	+		Dshi_3911	0.21	-1.4
139,441	+		Dshi_3911	0.24	-0.6
139,445	-		Dshi_3911	0.24	+0.4
139,445	-		Dshi_3911	0.24	-0.4
139,445	-		Dshi_3911	0.24	-0.1
139,451	+		Dshi_3911	0.25	-0.5
139,462	+		Dshi_3911	0.25	+1.0
139,482	+		Dshi_3911	0.27	-0.2
139,495	-		Dshi_3911	0.28	-0.2
139,555	-		Dshi_3911	0.32	+0.1
139,557	+		Dshi_3911	0.32	+0.2
139,565	-		Dshi_3911	0.32	-1.0
139,565	-		Dshi_3911	0.32	-1.0
139,604	-		Dshi_3911	0.35	-1.2
139,620	+		Dshi_3911	0.36	-0.9
139,635	-		Dshi_3911	0.37	+0.3
139,637	-		Dshi_3911	0.37	-0.4
139,652	+		Dshi_3911	0.38	-0.4
139,660	-		Dshi_3911	0.39	-0.3
139,667	+		Dshi_3911	0.39	-0.8
139,683	+		Dshi_3911	0.41	-0.3
139,701	-		Dshi_3911	0.42	-0.1
139,705	-		Dshi_3911	0.42	-0.6
139,737	-		Dshi_3911	0.44	-1.9
139,778	-		Dshi_3911	0.47	+0.2
139,863	+		Dshi_3911	0.53	-3.3
139,897	-		Dshi_3911	0.55	-0.1
139,907	+		Dshi_3911	0.56	-0.1
139,907	+		Dshi_3911	0.56	-0.4
139,926	+		Dshi_3911	0.57	-0.7
139,928	-		Dshi_3911	0.57	-0.4
139,934	-		Dshi_3911	0.58	+0.1
139,934	-		Dshi_3911	0.58	-0.3
139,955	+		Dshi_3911	0.59	-0.6
139,964	-		Dshi_3911	0.60	-0.1
140,006	-		Dshi_3911	0.63	+0.7
140,008	-		Dshi_3911	0.63	-0.6
140,110	+		Dshi_3911	0.70	+0.2
140,186	-		Dshi_3911	0.75	-2.0
140,186	-		Dshi_3911	0.75	+0.0
140,201	+		Dshi_3911	0.76	-0.8
140,345	+		Dshi_3911	0.86	+0.2
140,353	-		Dshi_3911	0.86	-0.0
140,353	-		Dshi_3911	0.86	+0.9
140,403	+		Dshi_3911	0.90	-0.1
140,410	+				-2.6
140,420	+				+0.0
140,428	-				-0.5
140,460	-				-0.6
140,470	-				+0.5
140,471	-				-0.4
140,471	-				-0.4
140,499	+				-1.6
140,514	-				-0.1
140,631	-				-0.4
140,631	-				+0.0
140,694	+				-0.5
140,738	+				-1.0
140,739	+				-1.4
140,749	-				+0.4
140,750	-				+0.8
140,760	-				-0.1
140,772	-				-0.9
140,794	-				-0.2
140,794	-				+0.3
140,798	+				-0.2
140,815	-				-0.3
140,820	+				-0.5
140,826	-				-0.4
140,858	-		Dshi_3912	0.16	-0.3
140,858	-		Dshi_3912	0.16	-0.7
140,887	+				-1.6
140,980	+		Dshi_3912	0.42	-0.6
141,001	+		Dshi_3912	0.46	-0.2
141,017	-		Dshi_3912	0.49	-0.5
141,019	+		Dshi_3912	0.50	-0.6
141,128	+		Dshi_3912	0.72	-0.3
141,164	+		Dshi_3912	0.80	+0.5
141,165	+				-0.6
141,224	-				+0.4
141,224	-				+0.3
141,226	+				-0.9
141,311	+				+0.0
141,337	+				-0.4
141,345	-				+0.3
141,402	+				-0.5
141,402	+				-0.3
141,409	-				+0.1
141,410	-				-1.7
141,458	-				-1.0
141,496	-				-1.4
141,531	+		Dshi_3913	0.12	-0.4
141,531	+		Dshi_3913	0.12	-2.3
141,531	+		Dshi_3913	0.12	-0.4