Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2339

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2338 and Dshi_2339 are separated by 123 nucleotidesDshi_2339 and Dshi_2340 are separated by 55 nucleotides Dshi_2338: Dshi_2338 - hypothetical protein (RefSeq), at 2,467,216 to 2,468,406 _2338 Dshi_2339: Dshi_2339 - SirA family protein (RefSeq), at 2,468,530 to 2,468,757 _2339 Dshi_2340: Dshi_2340 - ribonuclease, Rne/Rng family (RefSeq), at 2,468,813 to 2,471,893 _2340 Position (kb) 2468 2469Strain fitness (log2 ratio) -1 0 1at 2467.535 kb on + strand, within Dshi_2338at 2467.557 kb on - strand, within Dshi_2338at 2467.594 kb on + strand, within Dshi_2338at 2467.805 kb on - strand, within Dshi_2338at 2467.810 kb on + strand, within Dshi_2338at 2467.824 kb on - strand, within Dshi_2338at 2467.877 kb on + strand, within Dshi_2338at 2468.015 kb on + strand, within Dshi_2338at 2468.109 kb on - strand, within Dshi_2338at 2468.336 kb on + strandat 2468.432 kb on - strandat 2468.432 kb on - strandat 2468.456 kb on + strandat 2468.463 kb on + strandat 2468.579 kb on - strand, within Dshi_2339at 2468.855 kb on - strandat 2469.140 kb on - strand, within Dshi_2340at 2469.221 kb on + strand, within Dshi_2340at 2469.321 kb on - strand, within Dshi_2340at 2469.368 kb on - strand, within Dshi_2340at 2469.441 kb on + strand, within Dshi_2340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,467,535 + Dshi_2338 0.27 -0.7
2,467,557 - Dshi_2338 0.29 +0.4
2,467,594 + Dshi_2338 0.32 -0.4
2,467,805 - Dshi_2338 0.49 +0.2
2,467,810 + Dshi_2338 0.50 -0.4
2,467,824 - Dshi_2338 0.51 -0.3
2,467,877 + Dshi_2338 0.55 +0.9
2,468,015 + Dshi_2338 0.67 -0.5
2,468,109 - Dshi_2338 0.75 -0.4
2,468,336 + +0.0
2,468,432 - -0.1
2,468,432 - +1.0
2,468,456 + -0.8
2,468,463 + +0.1
2,468,579 - Dshi_2339 0.21 +0.8
2,468,855 - -0.1
2,469,140 - Dshi_2340 0.11 -0.5
2,469,221 + Dshi_2340 0.13 +0.0
2,469,321 - Dshi_2340 0.16 -1.4
2,469,368 - Dshi_2340 0.18 +0.2
2,469,441 + Dshi_2340 0.20 -1.4

Or see this region's nucleotide sequence