Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0687

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0686 and Dshi_0687 are separated by 107 nucleotidesDshi_0687 and Dshi_0688 are separated by 141 nucleotides Dshi_0686: Dshi_0686 - regulatory protein, putative (RefSeq), at 690,358 to 692,448 _0686 Dshi_0687: Dshi_0687 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 692,556 to 693,332 _0687 Dshi_0688: Dshi_0688 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 693,474 to 694,838 _0688 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1 2at 691.661 kb on - strand, within Dshi_0686at 691.719 kb on + strand, within Dshi_0686at 691.719 kb on + strand, within Dshi_0686at 691.727 kb on - strand, within Dshi_0686at 691.810 kb on + strand, within Dshi_0686at 691.810 kb on + strand, within Dshi_0686at 691.818 kb on - strand, within Dshi_0686at 691.818 kb on - strand, within Dshi_0686at 691.818 kb on - strand, within Dshi_0686at 691.837 kb on - strand, within Dshi_0686at 691.899 kb on + strand, within Dshi_0686at 691.899 kb on + strand, within Dshi_0686at 691.913 kb on + strand, within Dshi_0686at 691.923 kb on + strand, within Dshi_0686at 691.996 kb on - strand, within Dshi_0686at 692.196 kb on + strand, within Dshi_0686at 692.431 kb on + strandat 692.519 kb on + strandat 692.540 kb on + strandat 692.592 kb on + strandat 692.613 kb on - strandat 692.637 kb on + strand, within Dshi_0687at 692.684 kb on - strand, within Dshi_0687at 692.684 kb on - strand, within Dshi_0687at 692.805 kb on + strand, within Dshi_0687at 692.823 kb on + strand, within Dshi_0687at 692.956 kb on - strand, within Dshi_0687at 693.112 kb on + strand, within Dshi_0687at 693.203 kb on + strand, within Dshi_0687at 693.232 kb on - strand, within Dshi_0687at 693.368 kb on - strandat 693.393 kb on + strandat 693.440 kb on + strandat 693.477 kb on + strandat 693.511 kb on - strandat 693.654 kb on - strand, within Dshi_0688at 693.726 kb on - strand, within Dshi_0688at 693.761 kb on - strand, within Dshi_0688at 693.780 kb on - strandat 693.816 kb on + strand, within Dshi_0688at 693.860 kb on - strand, within Dshi_0688at 693.969 kb on + strand, within Dshi_0688at 694.060 kb on - strand, within Dshi_0688at 694.090 kb on - strand, within Dshi_0688at 694.112 kb on + strand, within Dshi_0688at 694.121 kb on + strand, within Dshi_0688at 694.190 kb on - strand, within Dshi_0688at 694.241 kb on + strand, within Dshi_0688at 694.284 kb on - strand, within Dshi_0688at 694.293 kb on + strand, within Dshi_0688

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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691,661 - Dshi_0686 0.62 +1.8
691,719 + Dshi_0686 0.65 -0.3
691,719 + Dshi_0686 0.65 +0.7
691,727 - Dshi_0686 0.65 +0.3
691,810 + Dshi_0686 0.69 -0.3
691,810 + Dshi_0686 0.69 +0.1
691,818 - Dshi_0686 0.70 +0.8
691,818 - Dshi_0686 0.70 -0.5
691,818 - Dshi_0686 0.70 +0.0
691,837 - Dshi_0686 0.71 +0.9
691,899 + Dshi_0686 0.74 +0.3
691,899 + Dshi_0686 0.74 -0.3
691,913 + Dshi_0686 0.74 +0.2
691,923 + Dshi_0686 0.75 -0.4
691,996 - Dshi_0686 0.78 -0.2
692,196 + Dshi_0686 0.88 -0.1
692,431 + -0.1
692,519 + +0.7
692,540 + +0.6
692,592 + -0.3
692,613 - -0.7
692,637 + Dshi_0687 0.10 -0.0
692,684 - Dshi_0687 0.16 +0.4
692,684 - Dshi_0687 0.16 +0.3
692,805 + Dshi_0687 0.32 -0.2
692,823 + Dshi_0687 0.34 +0.0
692,956 - Dshi_0687 0.51 +2.7
693,112 + Dshi_0687 0.72 +0.5
693,203 + Dshi_0687 0.83 +0.6
693,232 - Dshi_0687 0.87 +0.4
693,368 - +0.2
693,393 + +0.6
693,440 + -0.2
693,477 + -0.2
693,511 - -0.1
693,654 - Dshi_0688 0.13 -0.4
693,726 - Dshi_0688 0.18 -0.2
693,761 - Dshi_0688 0.21 +0.8
693,780 - +1.1
693,816 + Dshi_0688 0.25 -0.2
693,860 - Dshi_0688 0.28 -0.6
693,969 + Dshi_0688 0.36 +0.6
694,060 - Dshi_0688 0.43 +0.3
694,090 - Dshi_0688 0.45 -0.5
694,112 + Dshi_0688 0.47 +0.9
694,121 + Dshi_0688 0.47 +0.1
694,190 - Dshi_0688 0.52 -2.1
694,241 + Dshi_0688 0.56 +0.1
694,284 - Dshi_0688 0.59 +0.5
694,293 + Dshi_0688 0.60 +0.2

Or see this region's nucleotide sequence