Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0036

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0035 and Dshi_0036 are separated by 73 nucleotidesDshi_0036 and Dshi_0037 are separated by 340 nucleotides Dshi_0035: Dshi_0035 - Thioredoxin domain (RefSeq), at 37,578 to 38,489 _0035 Dshi_0036: Dshi_0036 - exodeoxyribonuclease III Xth (RefSeq), at 38,563 to 39,351 _0036 Dshi_0037: Dshi_0037 - LPXTG-motif cell wall anchor domain (RefSeq), at 39,692 to 40,216 _0037 Position (kb) 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 37.724 kb on + strand, within Dshi_0035at 37.780 kb on - strand, within Dshi_0035at 37.790 kb on - strand, within Dshi_0035at 37.939 kb on + strand, within Dshi_0035at 38.019 kb on - strand, within Dshi_0035at 38.240 kb on - strand, within Dshi_0035at 38.255 kb on - strand, within Dshi_0035at 38.255 kb on - strand, within Dshi_0035at 38.255 kb on - strand, within Dshi_0035at 38.415 kb on - strandat 38.541 kb on + strandat 38.677 kb on + strand, within Dshi_0036at 38.794 kb on - strand, within Dshi_0036at 38.846 kb on + strand, within Dshi_0036at 39.021 kb on - strand, within Dshi_0036at 39.083 kb on + strand, within Dshi_0036at 39.128 kb on - strand, within Dshi_0036at 39.162 kb on - strand, within Dshi_0036at 39.176 kb on - strand, within Dshi_0036at 39.295 kb on - strandat 39.317 kb on + strandat 39.325 kb on - strandat 39.341 kb on + strandat 39.371 kb on - strandat 39.410 kb on + strandat 39.424 kb on - strandat 39.482 kb on + strandat 39.520 kb on - strandat 39.520 kb on - strandat 39.525 kb on - strandat 39.528 kb on + strandat 39.637 kb on - strandat 39.642 kb on - strandat 39.644 kb on - strandat 39.649 kb on + strandat 39.669 kb on + strandat 39.669 kb on + strandat 39.692 kb on - strandat 39.694 kb on + strandat 39.706 kb on + strandat 39.786 kb on - strand, within Dshi_0037at 39.930 kb on + strand, within Dshi_0037at 40.212 kb on + strandat 40.212 kb on + strandat 40.327 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
37,724 + Dshi_0035 0.16 -1.0
37,780 - Dshi_0035 0.22 -2.1
37,790 - Dshi_0035 0.23 -3.4
37,939 + Dshi_0035 0.40 -2.4
38,019 - Dshi_0035 0.48 -2.2
38,240 - Dshi_0035 0.73 -1.1
38,255 - Dshi_0035 0.74 -1.8
38,255 - Dshi_0035 0.74 -3.6
38,255 - Dshi_0035 0.74 -3.8
38,415 - -3.2
38,541 + -0.3
38,677 + Dshi_0036 0.14 +0.2
38,794 - Dshi_0036 0.29 +0.1
38,846 + Dshi_0036 0.36 -0.2
39,021 - Dshi_0036 0.58 -1.3
39,083 + Dshi_0036 0.66 -1.5
39,128 - Dshi_0036 0.72 -0.3
39,162 - Dshi_0036 0.76 +0.6
39,176 - Dshi_0036 0.78 +0.9
39,295 - +0.7
39,317 + -0.0
39,325 - -0.2
39,341 + +0.2
39,371 - +0.2
39,410 + -0.2
39,424 - +0.5
39,482 + +0.9
39,520 - +0.3
39,520 - +0.5
39,525 - +0.3
39,528 + -0.1
39,637 - -0.4
39,642 - +0.3
39,644 - -0.2
39,649 + -0.4
39,669 + -1.0
39,669 + +0.1
39,692 - -1.6
39,694 + +1.0
39,706 + -0.6
39,786 - Dshi_0037 0.18 +0.2
39,930 + Dshi_0037 0.45 -1.6
40,212 + +0.3
40,212 + +0.1
40,327 + -0.7

Or see this region's nucleotide sequence