Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00870

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00860 and PGA1_c00870 are separated by 97 nucleotidesPGA1_c00870 and PGA1_c00880 are separated by 75 nucleotidesPGA1_c00880 and PGA1_c00890 overlap by 4 nucleotides PGA1_c00860: PGA1_c00860 - cystathionine beta-lyase PatB, at 84,883 to 86,055 _c00860 PGA1_c00870: PGA1_c00870 - peptide deformylase Def, at 86,153 to 86,671 _c00870 PGA1_c00880: PGA1_c00880 - peptide deformylase Def, at 86,747 to 87,256 _c00880 PGA1_c00890: PGA1_c00890 - peptide deformylase Def, at 87,253 to 87,750 _c00890 Position (kb) 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 85.183 kb on - strand, within PGA1_c00860at 85.203 kb on + strand, within PGA1_c00860at 85.210 kb on - strand, within PGA1_c00860at 85.315 kb on + strand, within PGA1_c00860at 85.318 kb on - strand, within PGA1_c00860at 85.390 kb on + strand, within PGA1_c00860at 85.395 kb on + strand, within PGA1_c00860at 85.398 kb on - strand, within PGA1_c00860at 85.398 kb on - strand, within PGA1_c00860at 85.413 kb on + strand, within PGA1_c00860at 85.413 kb on + strand, within PGA1_c00860at 85.413 kb on + strand, within PGA1_c00860at 85.436 kb on + strand, within PGA1_c00860at 85.476 kb on - strand, within PGA1_c00860at 85.509 kb on + strand, within PGA1_c00860at 85.509 kb on + strand, within PGA1_c00860at 85.509 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.528 kb on - strand, within PGA1_c00860at 85.557 kb on + strand, within PGA1_c00860at 85.651 kb on - strand, within PGA1_c00860at 85.653 kb on + strand, within PGA1_c00860at 85.661 kb on - strand, within PGA1_c00860at 85.661 kb on - strand, within PGA1_c00860at 85.661 kb on - strand, within PGA1_c00860at 85.680 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.708 kb on - strand, within PGA1_c00860at 85.739 kb on - strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.760 kb on + strand, within PGA1_c00860at 85.768 kb on - strand, within PGA1_c00860at 85.768 kb on - strand, within PGA1_c00860at 85.770 kb on + strand, within PGA1_c00860at 85.770 kb on + strand, within PGA1_c00860at 85.770 kb on + strand, within PGA1_c00860at 85.773 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.778 kb on - strand, within PGA1_c00860at 85.783 kb on - strand, within PGA1_c00860at 85.829 kb on + strand, within PGA1_c00860at 85.846 kb on + strand, within PGA1_c00860at 85.864 kb on + strand, within PGA1_c00860at 85.873 kb on + strand, within PGA1_c00860at 85.890 kb on - strand, within PGA1_c00860at 85.913 kb on + strand, within PGA1_c00860at 85.925 kb on - strand, within PGA1_c00860at 85.925 kb on - strand, within PGA1_c00860at 85.925 kb on - strand, within PGA1_c00860at 86.000 kb on - strandat 86.033 kb on + strandat 86.063 kb on - strandat 86.071 kb on + strandat 86.123 kb on - strandat 86.628 kb on + strandat 86.696 kb on - strandat 86.705 kb on + strandat 86.711 kb on + strandat 86.711 kb on + strandat 86.711 kb on + strandat 86.711 kb on + strandat 86.713 kb on - strandat 86.720 kb on - strandat 86.791 kb on - strandat 86.889 kb on + strand, within PGA1_c00880at 86.934 kb on + strand, within PGA1_c00880at 86.942 kb on - strand, within PGA1_c00880at 86.957 kb on + strand, within PGA1_c00880at 86.957 kb on + strand, within PGA1_c00880at 86.962 kb on + strand, within PGA1_c00880at 86.965 kb on - strand, within PGA1_c00880at 86.982 kb on + strand, within PGA1_c00880at 87.045 kb on + strand, within PGA1_c00880at 87.045 kb on + strand, within PGA1_c00880at 87.053 kb on - strand, within PGA1_c00880at 87.053 kb on - strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.125 kb on - strand, within PGA1_c00880at 87.145 kb on - strand, within PGA1_c00880at 87.162 kb on + strand, within PGA1_c00880at 87.162 kb on + strand, within PGA1_c00880at 87.187 kb on - strand, within PGA1_c00880at 87.189 kb on - strand, within PGA1_c00880at 87.190 kb on + strand, within PGA1_c00880at 87.195 kb on + strand, within PGA1_c00880at 87.203 kb on - strand, within PGA1_c00880at 87.249 kb on + strandat 87.257 kb on - strandat 87.257 kb on - strandat 87.268 kb on + strandat 87.273 kb on + strandat 87.281 kb on - strandat 87.310 kb on - strand, within PGA1_c00890at 87.313 kb on - strand, within PGA1_c00890at 87.341 kb on + strand, within PGA1_c00890at 87.370 kb on - strand, within PGA1_c00890at 87.383 kb on + strand, within PGA1_c00890at 87.395 kb on + strand, within PGA1_c00890at 87.430 kb on - strand, within PGA1_c00890at 87.453 kb on + strand, within PGA1_c00890at 87.463 kb on - strand, within PGA1_c00890at 87.474 kb on - strand, within PGA1_c00890at 87.526 kb on + strand, within PGA1_c00890at 87.527 kb on + strand, within PGA1_c00890at 87.535 kb on - strand, within PGA1_c00890at 87.563 kb on - strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.610 kb on - strand, within PGA1_c00890

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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85,183 - PGA1_c00860 0.26 -2.0
85,203 + PGA1_c00860 0.27 -1.1
85,210 - PGA1_c00860 0.28 +0.6
85,315 + PGA1_c00860 0.37 +2.0
85,318 - PGA1_c00860 0.37 -0.4
85,390 + PGA1_c00860 0.43 -2.4
85,395 + PGA1_c00860 0.44 -3.9
85,398 - PGA1_c00860 0.44 -1.6
85,398 - PGA1_c00860 0.44 -3.5
85,413 + PGA1_c00860 0.45 -0.3
85,413 + PGA1_c00860 0.45 +0.3
85,413 + PGA1_c00860 0.45 -1.2
85,436 + PGA1_c00860 0.47 -1.5
85,476 - PGA1_c00860 0.51 -2.6
85,509 + PGA1_c00860 0.53 -0.0
85,509 + PGA1_c00860 0.53 +0.6
85,509 + PGA1_c00860 0.53 +0.8
85,520 + PGA1_c00860 0.54 +1.7
85,520 + PGA1_c00860 0.54 -0.6
85,520 + PGA1_c00860 0.54 -1.4
85,520 + PGA1_c00860 0.54 +0.1
85,528 - PGA1_c00860 0.55 -3.2
85,557 + PGA1_c00860 0.57 -0.6
85,651 - PGA1_c00860 0.65 -1.9
85,653 + PGA1_c00860 0.66 -1.5
85,661 - PGA1_c00860 0.66 -0.8
85,661 - PGA1_c00860 0.66 -0.4
85,661 - PGA1_c00860 0.66 -1.7
85,680 + PGA1_c00860 0.68 -2.0
85,700 + PGA1_c00860 0.70 -0.6
85,700 + PGA1_c00860 0.70 -1.1
85,700 + PGA1_c00860 0.70 -2.2
85,700 + PGA1_c00860 0.70 +0.2
85,708 - PGA1_c00860 0.70 -2.3
85,739 - PGA1_c00860 0.73 +0.8
85,760 + PGA1_c00860 0.75 +1.4
85,760 + PGA1_c00860 0.75 -1.0
85,760 + PGA1_c00860 0.75 -0.9
85,760 + PGA1_c00860 0.75 +0.1
85,760 + PGA1_c00860 0.75 -2.1
85,760 + PGA1_c00860 0.75 -2.8
85,760 + PGA1_c00860 0.75 -1.1
85,768 - PGA1_c00860 0.75 +1.6
85,768 - PGA1_c00860 0.75 -0.6
85,770 + PGA1_c00860 0.76 -1.8
85,770 + PGA1_c00860 0.76 -0.1
85,770 + PGA1_c00860 0.76 -0.5
85,773 - PGA1_c00860 0.76 -0.2
85,778 - PGA1_c00860 0.76 +0.7
85,778 - PGA1_c00860 0.76 -1.4
85,778 - PGA1_c00860 0.76 +0.1
85,778 - PGA1_c00860 0.76 -3.2
85,778 - PGA1_c00860 0.76 -2.4
85,778 - PGA1_c00860 0.76 +0.9
85,778 - PGA1_c00860 0.76 -1.6
85,783 - PGA1_c00860 0.77 -2.0
85,829 + PGA1_c00860 0.81 +0.1
85,846 + PGA1_c00860 0.82 -1.1
85,864 + PGA1_c00860 0.84 -1.4
85,873 + PGA1_c00860 0.84 -0.8
85,890 - PGA1_c00860 0.86 -1.4
85,913 + PGA1_c00860 0.88 -0.5
85,925 - PGA1_c00860 0.89 -2.4
85,925 - PGA1_c00860 0.89 -3.0
85,925 - PGA1_c00860 0.89 -0.6
86,000 - +0.8
86,033 + -0.1
86,063 - -0.1
86,071 + +0.7
86,123 - -0.8
86,628 + +1.0
86,696 - +1.0
86,705 + +0.2
86,711 + -0.6
86,711 + +0.4
86,711 + -1.7
86,711 + -1.4
86,713 - +0.1
86,720 - +1.9
86,791 - -0.4
86,889 + PGA1_c00880 0.28 -0.1
86,934 + PGA1_c00880 0.37 +0.4
86,942 - PGA1_c00880 0.38 +1.7
86,957 + PGA1_c00880 0.41 +0.2
86,957 + PGA1_c00880 0.41 +0.5
86,962 + PGA1_c00880 0.42 -2.2
86,965 - PGA1_c00880 0.43 +1.6
86,982 + PGA1_c00880 0.46 -2.2
87,045 + PGA1_c00880 0.58 -0.2
87,045 + PGA1_c00880 0.58 +0.6
87,053 - PGA1_c00880 0.60 +0.0
87,053 - PGA1_c00880 0.60 +0.8
87,117 + PGA1_c00880 0.73 -1.0
87,117 + PGA1_c00880 0.73 -1.5
87,117 + PGA1_c00880 0.73 -2.3
87,117 + PGA1_c00880 0.73 -0.0
87,125 - PGA1_c00880 0.74 +0.4
87,145 - PGA1_c00880 0.78 -2.0
87,162 + PGA1_c00880 0.81 -0.9
87,162 + PGA1_c00880 0.81 +0.0
87,187 - PGA1_c00880 0.86 -2.5
87,189 - PGA1_c00880 0.87 +1.6
87,190 + PGA1_c00880 0.87 -3.3
87,195 + PGA1_c00880 0.88 +0.5
87,203 - PGA1_c00880 0.89 -0.4
87,249 + -0.2
87,257 - +1.0
87,257 - -1.0
87,268 + +1.4
87,273 + -0.8
87,281 - +2.4
87,310 - PGA1_c00890 0.11 +1.2
87,313 - PGA1_c00890 0.12 -0.6
87,341 + PGA1_c00890 0.18 -1.7
87,370 - PGA1_c00890 0.23 -0.8
87,383 + PGA1_c00890 0.26 -1.3
87,395 + PGA1_c00890 0.29 -0.1
87,430 - PGA1_c00890 0.36 -2.9
87,453 + PGA1_c00890 0.40 +1.4
87,463 - PGA1_c00890 0.42 -1.7
87,474 - PGA1_c00890 0.44 +0.4
87,526 + PGA1_c00890 0.55 -0.2
87,527 + PGA1_c00890 0.55 +1.6
87,535 - PGA1_c00890 0.57 -0.0
87,563 - PGA1_c00890 0.62 -1.6
87,592 + PGA1_c00890 0.68 -0.7
87,592 + PGA1_c00890 0.68 -0.7
87,592 + PGA1_c00890 0.68 -1.6
87,610 - PGA1_c00890 0.72 -0.6

Or see this region's nucleotide sequence