Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07370

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c07350 and PGA1_c07360 overlap by 4 nucleotidesPGA1_c07360 and PGA1_c07370 overlap by 4 nucleotidesPGA1_c07370 and PGA1_c07380 overlap by 1 nucleotides PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134 _c07350 PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108 _c07360 PGA1_c07370: PGA1_c07370 - putative short chain dehydrogenase, at 759,105 to 759,875 _c07370 PGA1_c07380: PGA1_c07380 - dihydroxy-acid dehydratase IlvD, at 759,875 to 761,590 _c07380 Position (kb) 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 758.110 kb on + strandat 758.110 kb on + strandat 758.176 kb on - strandat 758.192 kb on - strandat 758.206 kb on + strandat 758.211 kb on + strandat 758.259 kb on + strand, within PGA1_c07360at 758.259 kb on + strand, within PGA1_c07360at 758.263 kb on + strand, within PGA1_c07360at 758.354 kb on + strand, within PGA1_c07360at 758.354 kb on + strand, within PGA1_c07360at 758.360 kb on - strand, within PGA1_c07360at 758.409 kb on + strand, within PGA1_c07360at 758.427 kb on - strand, within PGA1_c07360at 758.591 kb on + strand, within PGA1_c07360at 758.635 kb on - strand, within PGA1_c07360at 758.649 kb on + strand, within PGA1_c07360at 758.735 kb on - strand, within PGA1_c07360at 758.814 kb on + strand, within PGA1_c07360at 758.819 kb on + strand, within PGA1_c07360at 758.822 kb on - strand, within PGA1_c07360at 758.827 kb on - strand, within PGA1_c07360at 758.892 kb on - strand, within PGA1_c07360at 758.938 kb on - strand, within PGA1_c07360at 758.964 kb on + strand, within PGA1_c07360at 758.969 kb on + strand, within PGA1_c07360at 759.011 kb on - strandat 759.057 kb on + strandat 759.057 kb on + strandat 759.064 kb on - strandat 759.116 kb on + strandat 759.122 kb on - strandat 759.148 kb on - strandat 759.175 kb on + strandat 759.180 kb on + strandat 759.265 kb on - strand, within PGA1_c07370at 759.284 kb on + strand, within PGA1_c07370at 759.292 kb on - strand, within PGA1_c07370at 759.316 kb on + strand, within PGA1_c07370at 759.316 kb on + strand, within PGA1_c07370at 759.323 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.337 kb on + strand, within PGA1_c07370at 759.357 kb on + strand, within PGA1_c07370at 759.365 kb on - strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.403 kb on + strand, within PGA1_c07370at 759.411 kb on + strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.430 kb on - strand, within PGA1_c07370at 759.467 kb on - strand, within PGA1_c07370at 759.504 kb on + strand, within PGA1_c07370at 759.527 kb on - strand, within PGA1_c07370at 759.530 kb on + strand, within PGA1_c07370at 759.565 kb on - strand, within PGA1_c07370at 759.565 kb on - strand, within PGA1_c07370at 759.575 kb on - strand, within PGA1_c07370at 759.602 kb on - strand, within PGA1_c07370at 759.729 kb on + strand, within PGA1_c07370at 759.744 kb on - strand, within PGA1_c07370at 759.873 kb on + strandat 759.881 kb on + strandat 759.905 kb on - strandat 760.069 kb on + strand, within PGA1_c07380at 760.080 kb on + strand, within PGA1_c07380at 760.102 kb on + strand, within PGA1_c07380at 760.106 kb on - strand, within PGA1_c07380at 760.108 kb on + strand, within PGA1_c07380at 760.108 kb on + strand, within PGA1_c07380at 760.111 kb on - strand, within PGA1_c07380at 760.168 kb on - strand, within PGA1_c07380at 760.168 kb on - strand, within PGA1_c07380at 760.178 kb on + strand, within PGA1_c07380at 760.208 kb on + strand, within PGA1_c07380at 760.346 kb on + strand, within PGA1_c07380at 760.357 kb on + strand, within PGA1_c07380at 760.379 kb on + strand, within PGA1_c07380at 760.452 kb on - strand, within PGA1_c07380at 760.490 kb on - strand, within PGA1_c07380at 760.495 kb on + strand, within PGA1_c07380at 760.547 kb on + strand, within PGA1_c07380at 760.589 kb on - strand, within PGA1_c07380at 760.648 kb on - strand, within PGA1_c07380at 760.716 kb on - strand, within PGA1_c07380at 760.716 kb on - strand, within PGA1_c07380at 760.737 kb on - strand, within PGA1_c07380at 760.792 kb on + strand, within PGA1_c07380at 760.832 kb on + strand, within PGA1_c07380at 760.848 kb on - strand, within PGA1_c07380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
758,110 + -1.8
758,110 + -0.5
758,176 - +0.5
758,192 - -2.4
758,206 + -1.4
758,211 + -1.1
758,259 + PGA1_c07360 0.13 -1.1
758,259 + PGA1_c07360 0.13 +1.0
758,263 + PGA1_c07360 0.13 -0.4
758,354 + PGA1_c07360 0.23 -3.0
758,354 + PGA1_c07360 0.23 -1.5
758,360 - PGA1_c07360 0.23 -1.1
758,409 + PGA1_c07360 0.28 +0.7
758,427 - PGA1_c07360 0.30 -0.1
758,591 + PGA1_c07360 0.47 -0.5
758,635 - PGA1_c07360 0.52 +0.3
758,649 + PGA1_c07360 0.53 -0.3
758,735 - PGA1_c07360 0.62 +1.1
758,814 + PGA1_c07360 0.70 +1.8
758,819 + PGA1_c07360 0.70 +0.2
758,822 - PGA1_c07360 0.71 -0.1
758,827 - PGA1_c07360 0.71 +0.8
758,892 - PGA1_c07360 0.78 +0.2
758,938 - PGA1_c07360 0.83 -0.1
758,964 + PGA1_c07360 0.85 +0.6
758,969 + PGA1_c07360 0.86 -1.8
759,011 - +0.0
759,057 + -0.2
759,057 + -0.4
759,064 - -2.0
759,116 + +1.6
759,122 - -2.3
759,148 - +0.0
759,175 + +1.5
759,180 + +0.6
759,265 - PGA1_c07370 0.21 -2.8
759,284 + PGA1_c07370 0.23 +1.4
759,292 - PGA1_c07370 0.24 +0.4
759,316 + PGA1_c07370 0.27 -1.1
759,316 + PGA1_c07370 0.27 -0.1
759,323 - PGA1_c07370 0.28 -0.4
759,324 - PGA1_c07370 0.28 +1.5
759,324 - PGA1_c07370 0.28 +0.3
759,324 - PGA1_c07370 0.28 -1.5
759,337 + PGA1_c07370 0.30 +1.1
759,357 + PGA1_c07370 0.33 +0.5
759,365 - PGA1_c07370 0.34 +0.7
759,393 + PGA1_c07370 0.37 -1.4
759,393 + PGA1_c07370 0.37 -2.9
759,393 + PGA1_c07370 0.37 -0.9
759,401 - PGA1_c07370 0.38 -2.0
759,401 - PGA1_c07370 0.38 -1.5
759,401 - PGA1_c07370 0.38 -0.4
759,401 - PGA1_c07370 0.38 -0.7
759,401 - PGA1_c07370 0.38 -2.5
759,401 - PGA1_c07370 0.38 +1.4
759,403 + PGA1_c07370 0.39 +1.4
759,411 + PGA1_c07370 0.40 -0.4
759,411 - PGA1_c07370 0.40 +0.3
759,411 - PGA1_c07370 0.40 +2.5
759,411 - PGA1_c07370 0.40 +0.2
759,430 - PGA1_c07370 0.42 +2.8
759,467 - PGA1_c07370 0.47 -0.9
759,504 + PGA1_c07370 0.52 -2.5
759,527 - PGA1_c07370 0.55 -0.1
759,530 + PGA1_c07370 0.55 -1.9
759,565 - PGA1_c07370 0.60 -0.0
759,565 - PGA1_c07370 0.60 +0.8
759,575 - PGA1_c07370 0.61 +1.5
759,602 - PGA1_c07370 0.64 -0.1
759,729 + PGA1_c07370 0.81 -1.4
759,744 - PGA1_c07370 0.83 -1.9
759,873 + +0.8
759,881 + -0.7
759,905 - +0.6
760,069 + PGA1_c07380 0.11 -1.5
760,080 + PGA1_c07380 0.12 -0.2
760,102 + PGA1_c07380 0.13 +0.6
760,106 - PGA1_c07380 0.13 -0.9
760,108 + PGA1_c07380 0.14 -0.9
760,108 + PGA1_c07380 0.14 -0.2
760,111 - PGA1_c07380 0.14 -0.5
760,168 - PGA1_c07380 0.17 -0.1
760,168 - PGA1_c07380 0.17 -0.3
760,178 + PGA1_c07380 0.18 +1.3
760,208 + PGA1_c07380 0.19 -0.7
760,346 + PGA1_c07380 0.27 +1.4
760,357 + PGA1_c07380 0.28 +0.8
760,379 + PGA1_c07380 0.29 +1.2
760,452 - PGA1_c07380 0.34 -3.1
760,490 - PGA1_c07380 0.36 -0.4
760,495 + PGA1_c07380 0.36 -1.2
760,547 + PGA1_c07380 0.39 -2.4
760,589 - PGA1_c07380 0.42 +1.2
760,648 - PGA1_c07380 0.45 +1.0
760,716 - PGA1_c07380 0.49 +0.3
760,716 - PGA1_c07380 0.49 +1.5
760,737 - PGA1_c07380 0.50 -0.2
760,792 + PGA1_c07380 0.53 -1.5
760,832 + PGA1_c07380 0.56 -2.0
760,848 - PGA1_c07380 0.57 -0.2

Or see this region's nucleotide sequence