Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00120

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00120 and PGA1_78p00130 are separated by 130 nucleotides PGA1_78p00120: PGA1_78p00120 - aldehyde dehydrogenase, at 14,064 to 15,503 _78p00120 PGA1_78p00130: PGA1_78p00130 - putative oxidoreductase, GFO/IDH/MOCA family, at 15,634 to 16,758 _78p00130 Position (kb) 14 15 16Strain fitness (log2 ratio) -1 0 1 2at 13.136 kb on - strandat 13.222 kb on + strandat 13.306 kb on + strandat 13.306 kb on + strandat 13.311 kb on + strandat 13.314 kb on + strandat 13.461 kb on - strandat 13.484 kb on + strandat 13.510 kb on - strandat 13.515 kb on - strandat 13.537 kb on - strandat 13.547 kb on - strandat 13.574 kb on - strandat 13.602 kb on - strandat 13.788 kb on - strandat 13.802 kb on + strandat 13.852 kb on - strandat 14.116 kb on - strandat 14.315 kb on + strand, within PGA1_78p00120at 14.530 kb on + strand, within PGA1_78p00120at 14.954 kb on - strand, within PGA1_78p00120at 14.980 kb on - strand, within PGA1_78p00120at 15.222 kb on - strand, within PGA1_78p00120at 15.424 kb on + strandat 15.424 kb on + strandat 15.603 kb on - strandat 15.965 kb on - strand, within PGA1_78p00130

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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13,136 - +1.3
13,222 + +0.8
13,306 + -1.3
13,306 + +0.9
13,311 + +2.1
13,314 + -1.0
13,461 - -0.3
13,484 + +0.7
13,510 - +2.1
13,515 - +1.0
13,537 - -0.3
13,547 - +0.3
13,574 - -1.3
13,602 - -1.0
13,788 - -0.5
13,802 + -0.3
13,852 - -0.3
14,116 - +0.5
14,315 + PGA1_78p00120 0.17 -1.5
14,530 + PGA1_78p00120 0.32 -0.7
14,954 - PGA1_78p00120 0.62 +0.5
14,980 - PGA1_78p00120 0.64 -1.0
15,222 - PGA1_78p00120 0.80 +0.7
15,424 + +2.3
15,424 + -0.2
15,603 - +1.9
15,965 - PGA1_78p00130 0.29 -1.0

Or see this region's nucleotide sequence