Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01420 and PGA1_262p01430 overlap by 4 nucleotides PGA1_262p01430 and PGA1_262p01440 are separated by 103 nucleotides
PGA1_262p01420: PGA1_262p01420 - Protein of unknown function (DUF3726)., at 154,036 to 154,686
_262p01420
PGA1_262p01430: PGA1_262p01430 - hypothetical protein, at 154,683 to 156,374
_262p01430
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand at 153.949 kb on + strand at 154.006 kb on - strand at 154.110 kb on + strand, within PGA1_262p01420 at 154.469 kb on + strand, within PGA1_262p01420 at 154.697 kb on + strand at 154.743 kb on - strand at 154.839 kb on + strand at 154.995 kb on + strand, within PGA1_262p01430 at 155.002 kb on + strand, within PGA1_262p01430 at 155.171 kb on + strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.261 kb on - strand, within PGA1_262p01430 at 155.316 kb on - strand, within PGA1_262p01430 at 155.350 kb on + strand, within PGA1_262p01430 at 155.369 kb on + strand, within PGA1_262p01430 at 155.377 kb on - strand, within PGA1_262p01430 at 155.479 kb on - strand, within PGA1_262p01430 at 155.509 kb on + strand, within PGA1_262p01430 at 155.517 kb on - strand, within PGA1_262p01430 at 155.527 kb on - strand, within PGA1_262p01430 at 155.678 kb on - strand, within PGA1_262p01430 at 155.798 kb on - strand, within PGA1_262p01430 at 155.877 kb on - strand, within PGA1_262p01430 at 155.991 kb on - strand, within PGA1_262p01430 at 156.028 kb on + strand, within PGA1_262p01430 at 156.081 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.105 kb on - strand, within PGA1_262p01430 at 156.119 kb on + strand, within PGA1_262p01430 at 156.207 kb on + strand at 156.207 kb on + strand at 156.215 kb on - strand at 156.299 kb on + strand at 156.412 kb on - strand at 156.445 kb on - strand at 156.491 kb on + strand at 156.495 kb on + strand at 156.547 kb on + strand at 156.633 kb on - strand, within PGA1_262p01440 at 156.660 kb on + strand, within PGA1_262p01440 at 157.022 kb on - strand, within PGA1_262p01440 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 153,691 - +1.0 153,749 - -0.4 153,749 - +0.4 153,949 + +1.8 154,006 - +1.3 154,110 + PGA1_262p01420 0.11 +1.5 154,469 + PGA1_262p01420 0.67 -1.8 154,697 + -1.8 154,743 - -0.7 154,839 + +2.1 154,995 + PGA1_262p01430 0.18 +0.8 155,002 + PGA1_262p01430 0.19 -0.8 155,171 + PGA1_262p01430 0.29 -1.3 155,174 - PGA1_262p01430 0.29 -0.3 155,174 - PGA1_262p01430 0.29 -2.5 155,261 - PGA1_262p01430 0.34 -2.6 155,316 - PGA1_262p01430 0.37 +0.0 155,350 + PGA1_262p01430 0.39 +0.3 155,369 + PGA1_262p01430 0.41 -0.1 155,377 - PGA1_262p01430 0.41 -2.2 155,479 - PGA1_262p01430 0.47 -1.6 155,509 + PGA1_262p01430 0.49 -0.8 155,517 - PGA1_262p01430 0.49 -0.3 155,527 - PGA1_262p01430 0.50 +0.7 155,678 - PGA1_262p01430 0.59 -0.3 155,798 - PGA1_262p01430 0.66 +1.3 155,877 - PGA1_262p01430 0.71 +1.0 155,991 - PGA1_262p01430 0.77 +0.6 156,028 + PGA1_262p01430 0.79 -1.6 156,081 - PGA1_262p01430 0.83 -1.8 156,091 - PGA1_262p01430 0.83 -2.8 156,091 - PGA1_262p01430 0.83 -2.2 156,105 - PGA1_262p01430 0.84 +0.0 156,119 + PGA1_262p01430 0.85 +0.8 156,207 + -0.3 156,207 + +0.3 156,215 - +0.1 156,299 + -0.8 156,412 - -1.3 156,445 - -3.0 156,491 + +0.4 156,495 + -2.2 156,547 + +0.2 156,633 - PGA1_262p01440 0.10 +0.0 156,660 + PGA1_262p01440 0.12 +0.0 157,022 - PGA1_262p01440 0.35 +0.0 157,093 - PGA1_262p01440 0.40 +0.5 157,215 - PGA1_262p01440 0.48 -1.5 157,344 + PGA1_262p01440 0.56 +1.5
Or see this region's nucleotide sequence