Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02860 and PGA1_c02870 are separated by 34 nucleotides PGA1_c02870 and PGA1_c02880 are separated by 314 nucleotides
PGA1_c02860: PGA1_c02860 - putative sodium/calcium exchanger protein, at 275,667 to 276,611
_c02860
PGA1_c02870: PGA1_c02870 - short chain dehydrogenase, at 276,646 to 277,422
_c02870
PGA1_c02880: PGA1_c02880 - uvrABC system protein C, at 277,737 to 279,626
_c02880
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 276.595 kb on - strand at 276.595 kb on - strand at 276.600 kb on - strand at 276.605 kb on + strand at 276.629 kb on + strand at 276.629 kb on + strand at 276.629 kb on + strand at 276.629 kb on + strand at 276.629 kb on + strand at 276.637 kb on - strand at 276.637 kb on - strand at 276.637 kb on - strand at 276.637 kb on - strand at 276.637 kb on - strand at 276.754 kb on - strand, within PGA1_c02870 at 276.799 kb on + strand, within PGA1_c02870 at 276.807 kb on - strand, within PGA1_c02870 at 276.830 kb on - strand, within PGA1_c02870 at 276.869 kb on + strand, within PGA1_c02870 at 276.887 kb on + strand, within PGA1_c02870 at 276.969 kb on - strand, within PGA1_c02870 at 277.025 kb on - strand, within PGA1_c02870 at 277.097 kb on - strand, within PGA1_c02870 at 277.121 kb on + strand, within PGA1_c02870 at 277.121 kb on - strand, within PGA1_c02870 at 277.129 kb on - strand, within PGA1_c02870 at 277.161 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.166 kb on + strand, within PGA1_c02870 at 277.174 kb on - strand, within PGA1_c02870 at 277.174 kb on - strand, within PGA1_c02870 at 277.174 kb on - strand, within PGA1_c02870 at 277.174 kb on - strand, within PGA1_c02870 at 277.174 kb on - strand, within PGA1_c02870 at 277.214 kb on + strand, within PGA1_c02870 at 277.229 kb on + strand, within PGA1_c02870 at 277.229 kb on + strand, within PGA1_c02870 at 277.229 kb on + strand, within PGA1_c02870 at 277.229 kb on + strand, within PGA1_c02870 at 277.229 kb on + strand, within PGA1_c02870 at 277.229 kb on + strand, within PGA1_c02870 at 277.271 kb on + strand, within PGA1_c02870 at 277.289 kb on + strand, within PGA1_c02870 at 277.289 kb on + strand, within PGA1_c02870 at 277.289 kb on + strand, within PGA1_c02870 at 277.289 kb on + strand, within PGA1_c02870 at 277.297 kb on - strand, within PGA1_c02870 at 277.305 kb on + strand, within PGA1_c02870 at 277.305 kb on + strand, within PGA1_c02870 at 277.305 kb on + strand, within PGA1_c02870 at 277.305 kb on + strand, within PGA1_c02870 at 277.313 kb on - strand, within PGA1_c02870 at 277.313 kb on - strand, within PGA1_c02870 at 277.313 kb on - strand, within PGA1_c02870 at 277.313 kb on - strand, within PGA1_c02870 at 277.313 kb on - strand, within PGA1_c02870 at 277.344 kb on + strand, within PGA1_c02870 at 277.381 kb on + strand at 277.389 kb on - strand at 277.396 kb on + strand at 277.404 kb on - strand at 277.426 kb on + strand at 277.439 kb on + strand at 277.439 kb on + strand at 277.447 kb on - strand at 277.447 kb on - strand at 277.447 kb on - strand at 277.473 kb on + strand at 277.473 kb on + strand at 277.482 kb on - strand at 277.571 kb on - strand at 277.630 kb on + strand at 277.637 kb on + strand at 277.645 kb on - strand at 277.645 kb on - strand at 277.647 kb on + strand at 277.647 kb on + strand at 277.655 kb on - strand at 277.655 kb on - strand at 277.671 kb on - strand at 277.746 kb on - strand at 277.751 kb on + strand at 277.751 kb on + strand at 277.759 kb on - strand at 277.759 kb on - strand at 277.759 kb on - strand at 277.794 kb on + strand at 277.797 kb on - strand at 277.801 kb on + strand at 277.816 kb on + strand at 277.824 kb on + strand at 277.824 kb on + strand at 277.832 kb on - strand at 277.832 kb on - strand at 277.832 kb on - strand at 277.832 kb on - strand at 277.852 kb on - strand at 277.880 kb on - strand at 277.924 kb on + strand at 277.924 kb on + strand at 277.932 kb on - strand, within PGA1_c02880 at 277.932 kb on - strand, within PGA1_c02880 at 277.985 kb on + strand, within PGA1_c02880 at 278.053 kb on - strand, within PGA1_c02880 at 278.053 kb on - strand, within PGA1_c02880 at 278.057 kb on + strand, within PGA1_c02880 at 278.070 kb on - strand, within PGA1_c02880 at 278.201 kb on - strand, within PGA1_c02880 at 278.238 kb on - strand, within PGA1_c02880 at 278.328 kb on - strand, within PGA1_c02880
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 276,595 - +2.8 276,595 - +0.1 276,600 - +0.3 276,605 + -0.4 276,629 + -1.2 276,629 + +1.6 276,629 + +0.2 276,629 + -0.5 276,629 + +1.9 276,637 - -0.6 276,637 - +3.5 276,637 - +2.1 276,637 - +0.3 276,637 - -1.1 276,754 - PGA1_c02870 0.14 -1.7 276,799 + PGA1_c02870 0.20 -1.0 276,807 - PGA1_c02870 0.21 +0.1 276,830 - PGA1_c02870 0.24 -1.0 276,869 + PGA1_c02870 0.29 -0.9 276,887 + PGA1_c02870 0.31 +0.4 276,969 - PGA1_c02870 0.42 -0.2 277,025 - PGA1_c02870 0.49 -0.9 277,097 - PGA1_c02870 0.58 +0.6 277,121 + PGA1_c02870 0.61 +2.0 277,121 - PGA1_c02870 0.61 -0.7 277,129 - PGA1_c02870 0.62 -2.4 277,161 + PGA1_c02870 0.66 +1.7 277,166 + PGA1_c02870 0.67 -2.4 277,166 + PGA1_c02870 0.67 +0.5 277,166 + PGA1_c02870 0.67 +1.7 277,166 + PGA1_c02870 0.67 -2.6 277,166 + PGA1_c02870 0.67 +0.8 277,166 + PGA1_c02870 0.67 -2.6 277,166 + PGA1_c02870 0.67 +1.0 277,174 - PGA1_c02870 0.68 +1.1 277,174 - PGA1_c02870 0.68 +0.6 277,174 - PGA1_c02870 0.68 -2.9 277,174 - PGA1_c02870 0.68 -1.4 277,174 - PGA1_c02870 0.68 -1.7 277,214 + PGA1_c02870 0.73 -1.2 277,229 + PGA1_c02870 0.75 +1.4 277,229 + PGA1_c02870 0.75 -1.9 277,229 + PGA1_c02870 0.75 -1.1 277,229 + PGA1_c02870 0.75 -2.0 277,229 + PGA1_c02870 0.75 -1.2 277,229 + PGA1_c02870 0.75 -0.1 277,271 + PGA1_c02870 0.80 +1.1 277,289 + PGA1_c02870 0.83 -1.5 277,289 + PGA1_c02870 0.83 -0.1 277,289 + PGA1_c02870 0.83 +0.7 277,289 + PGA1_c02870 0.83 +0.0 277,297 - PGA1_c02870 0.84 +0.8 277,305 + PGA1_c02870 0.85 -0.1 277,305 + PGA1_c02870 0.85 -0.1 277,305 + PGA1_c02870 0.85 +1.7 277,305 + PGA1_c02870 0.85 -1.4 277,313 - PGA1_c02870 0.86 -0.1 277,313 - PGA1_c02870 0.86 -2.7 277,313 - PGA1_c02870 0.86 -2.9 277,313 - PGA1_c02870 0.86 +2.5 277,313 - PGA1_c02870 0.86 -1.2 277,344 + PGA1_c02870 0.90 -2.2 277,381 + +0.7 277,389 - -0.2 277,396 + +0.3 277,404 - -1.9 277,426 + +0.5 277,439 + +1.1 277,439 + -0.7 277,447 - +0.6 277,447 - +0.8 277,447 - +0.1 277,473 + -2.4 277,473 + -0.9 277,482 - -0.4 277,571 - -1.4 277,630 + +0.8 277,637 + -0.2 277,645 - -1.8 277,645 - +1.0 277,647 + -1.2 277,647 + -2.4 277,655 - +0.2 277,655 - -1.4 277,671 - -1.9 277,746 - +1.0 277,751 + -0.2 277,751 + +0.2 277,759 - -2.6 277,759 - -2.2 277,759 - +0.2 277,794 + -0.1 277,797 - -0.2 277,801 + -1.6 277,816 + +0.8 277,824 + -2.7 277,824 + +1.4 277,832 - +0.3 277,832 - -0.7 277,832 - +0.6 277,832 - +0.4 277,852 - -0.9 277,880 - -2.2 277,924 + +0.8 277,924 + +0.8 277,932 - PGA1_c02880 0.10 +0.3 277,932 - PGA1_c02880 0.10 -1.9 277,985 + PGA1_c02880 0.13 -0.6 278,053 - PGA1_c02880 0.17 -2.4 278,053 - PGA1_c02880 0.17 -1.0 278,057 + PGA1_c02880 0.17 +1.1 278,070 - PGA1_c02880 0.18 -2.2 278,201 - PGA1_c02880 0.25 +0.8 278,238 - PGA1_c02880 0.27 -0.4 278,328 - PGA1_c02880 0.31 -0.8
Or see this region's nucleotide sequence