Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18680

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18650 and PGA1_c18660 are separated by 14 nucleotidesPGA1_c18660 and PGA1_c18670 are separated by 40 nucleotidesPGA1_c18670 and PGA1_c18680 are separated by 263 nucleotidesPGA1_c18680 and PGA1_c18690 are separated by 95 nucleotidesPGA1_c18690 and PGA1_c18700 are separated by 115 nucleotides PGA1_c18650: PGA1_c18650 - hypothetical protein, at 1,937,218 to 1,937,568 _c18650 PGA1_c18660: PGA1_c18660 - hypothetical protein, at 1,937,583 to 1,937,873 _c18660 PGA1_c18670: PGA1_c18670 - hypothetical protein, at 1,937,914 to 1,938,084 _c18670 PGA1_c18680: PGA1_c18680 - Site-specific recombinase XerD, at 1,938,348 to 1,939,349 _c18680 PGA1_c18690: PGA1_c18690 - tRNA-Leu, at 1,939,445 to 1,939,529 _c18690 PGA1_c18700: PGA1_c18700 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 1,939,645 to 1,941,342 _c18700 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1937.367 kb on + strand, within PGA1_c18650at 1937.429 kb on + strand, within PGA1_c18650at 1937.429 kb on + strand, within PGA1_c18650at 1937.429 kb on + strand, within PGA1_c18650at 1937.429 kb on + strand, within PGA1_c18650at 1937.430 kb on - strand, within PGA1_c18650at 1937.431 kb on + strand, within PGA1_c18650at 1937.437 kb on - strand, within PGA1_c18650at 1937.446 kb on + strand, within PGA1_c18650at 1937.605 kb on + strandat 1937.615 kb on + strand, within PGA1_c18660at 1937.637 kb on + strand, within PGA1_c18660at 1937.687 kb on + strand, within PGA1_c18660at 1937.691 kb on + strand, within PGA1_c18660at 1937.693 kb on + strand, within PGA1_c18660at 1937.699 kb on - strand, within PGA1_c18660at 1937.701 kb on + strand, within PGA1_c18660at 1937.770 kb on + strand, within PGA1_c18660at 1937.784 kb on + strand, within PGA1_c18660at 1937.803 kb on + strand, within PGA1_c18660at 1937.803 kb on + strand, within PGA1_c18660at 1937.840 kb on + strand, within PGA1_c18660at 1937.901 kb on + strandat 1937.901 kb on + strandat 1937.930 kb on - strandat 1938.116 kb on + strandat 1938.167 kb on - strandat 1938.167 kb on - strandat 1938.167 kb on - strandat 1938.168 kb on + strandat 1938.201 kb on - strandat 1938.238 kb on - strandat 1938.240 kb on + strandat 1938.252 kb on + strandat 1938.260 kb on - strandat 1938.260 kb on - strandat 1938.318 kb on + strandat 1938.340 kb on - strandat 1938.398 kb on - strandat 1938.479 kb on + strand, within PGA1_c18680at 1938.479 kb on + strand, within PGA1_c18680at 1938.505 kb on + strand, within PGA1_c18680at 1938.505 kb on + strand, within PGA1_c18680at 1938.513 kb on - strand, within PGA1_c18680at 1938.559 kb on - strand, within PGA1_c18680at 1938.561 kb on + strand, within PGA1_c18680at 1938.580 kb on + strand, within PGA1_c18680at 1938.581 kb on + strand, within PGA1_c18680at 1938.581 kb on + strand, within PGA1_c18680at 1938.589 kb on - strand, within PGA1_c18680at 1938.589 kb on - strand, within PGA1_c18680at 1938.610 kb on + strand, within PGA1_c18680at 1938.610 kb on + strand, within PGA1_c18680at 1938.610 kb on + strand, within PGA1_c18680at 1938.618 kb on - strand, within PGA1_c18680at 1938.618 kb on - strand, within PGA1_c18680at 1938.618 kb on - strand, within PGA1_c18680at 1938.645 kb on - strand, within PGA1_c18680at 1938.679 kb on - strand, within PGA1_c18680at 1938.679 kb on - strand, within PGA1_c18680at 1938.679 kb on - strand, within PGA1_c18680at 1938.706 kb on + strand, within PGA1_c18680at 1938.714 kb on - strand, within PGA1_c18680at 1938.717 kb on + strand, within PGA1_c18680at 1938.757 kb on + strand, within PGA1_c18680at 1938.772 kb on + strand, within PGA1_c18680at 1938.781 kb on - strand, within PGA1_c18680at 1938.781 kb on - strand, within PGA1_c18680at 1938.806 kb on + strand, within PGA1_c18680at 1938.814 kb on - strand, within PGA1_c18680at 1938.821 kb on + strand, within PGA1_c18680at 1938.827 kb on + strand, within PGA1_c18680at 1938.827 kb on + strand, within PGA1_c18680at 1938.853 kb on + strand, within PGA1_c18680at 1938.860 kb on + strand, within PGA1_c18680at 1938.914 kb on + strand, within PGA1_c18680at 1938.922 kb on - strand, within PGA1_c18680at 1938.985 kb on - strand, within PGA1_c18680at 1938.985 kb on - strand, within PGA1_c18680at 1938.985 kb on - strand, within PGA1_c18680at 1939.013 kb on + strand, within PGA1_c18680at 1939.013 kb on + strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.021 kb on - strand, within PGA1_c18680at 1939.047 kb on + strand, within PGA1_c18680at 1939.059 kb on + strand, within PGA1_c18680at 1939.095 kb on + strand, within PGA1_c18680at 1939.097 kb on + strand, within PGA1_c18680at 1939.097 kb on + strandat 1939.097 kb on + strand, within PGA1_c18680at 1939.097 kb on + strand, within PGA1_c18680at 1939.105 kb on - strand, within PGA1_c18680at 1939.105 kb on - strand, within PGA1_c18680at 1939.105 kb on - strand, within PGA1_c18680at 1939.105 kb on - strand, within PGA1_c18680at 1939.120 kb on + strand, within PGA1_c18680at 1939.122 kb on + strand, within PGA1_c18680at 1939.122 kb on + strand, within PGA1_c18680at 1939.184 kb on - strand, within PGA1_c18680at 1939.187 kb on + strand, within PGA1_c18680at 1939.331 kb on - strandat 1939.340 kb on - strandat 1939.340 kb on - strandat 1939.626 kb on + strandat 1939.634 kb on - strandat 1939.661 kb on - strandat 1939.663 kb on + strandat 1939.671 kb on - strandat 1939.671 kb on - strandat 1939.674 kb on - strandat 1939.707 kb on + strandat 1939.881 kb on + strand, within PGA1_c18700at 1939.912 kb on + strand, within PGA1_c18700at 1939.919 kb on + strand, within PGA1_c18700at 1939.920 kb on - strand, within PGA1_c18700at 1940.119 kb on - strand, within PGA1_c18700at 1940.170 kb on + strand, within PGA1_c18700at 1940.176 kb on + strand, within PGA1_c18700at 1940.185 kb on - strand, within PGA1_c18700at 1940.188 kb on + strand, within PGA1_c18700at 1940.251 kb on - strand, within PGA1_c18700at 1940.253 kb on - strand, within PGA1_c18700at 1940.260 kb on + strand, within PGA1_c18700at 1940.268 kb on - strand, within PGA1_c18700

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,937,367 + PGA1_c18650 0.42 -0.8
1,937,429 + PGA1_c18650 0.60 +0.6
1,937,429 + PGA1_c18650 0.60 +0.8
1,937,429 + PGA1_c18650 0.60 -0.4
1,937,429 + PGA1_c18650 0.60 -1.7
1,937,430 - PGA1_c18650 0.60 +2.0
1,937,431 + PGA1_c18650 0.61 +0.1
1,937,437 - PGA1_c18650 0.62 +1.1
1,937,446 + PGA1_c18650 0.65 -1.3
1,937,605 + -2.4
1,937,615 + PGA1_c18660 0.11 +1.2
1,937,637 + PGA1_c18660 0.19 +0.6
1,937,687 + PGA1_c18660 0.36 +1.2
1,937,691 + PGA1_c18660 0.37 -0.7
1,937,693 + PGA1_c18660 0.38 +0.1
1,937,699 - PGA1_c18660 0.40 -1.1
1,937,701 + PGA1_c18660 0.41 +0.1
1,937,770 + PGA1_c18660 0.64 +0.4
1,937,784 + PGA1_c18660 0.69 +0.6
1,937,803 + PGA1_c18660 0.76 +1.2
1,937,803 + PGA1_c18660 0.76 -1.5
1,937,840 + PGA1_c18660 0.88 -0.6
1,937,901 + +0.8
1,937,901 + +0.3
1,937,930 - +0.5
1,938,116 + -1.7
1,938,167 - -1.4
1,938,167 - -0.7
1,938,167 - +0.9
1,938,168 + -0.5
1,938,201 - +0.6
1,938,238 - -1.2
1,938,240 + -3.2
1,938,252 + +2.9
1,938,260 - -0.2
1,938,260 - +0.9
1,938,318 + +0.8
1,938,340 - -0.8
1,938,398 - +0.1
1,938,479 + PGA1_c18680 0.13 +1.1
1,938,479 + PGA1_c18680 0.13 -1.2
1,938,505 + PGA1_c18680 0.16 -1.5
1,938,505 + PGA1_c18680 0.16 -0.1
1,938,513 - PGA1_c18680 0.16 +0.6
1,938,559 - PGA1_c18680 0.21 -0.4
1,938,561 + PGA1_c18680 0.21 -1.5
1,938,580 + PGA1_c18680 0.23 -2.1
1,938,581 + PGA1_c18680 0.23 +1.2
1,938,581 + PGA1_c18680 0.23 -1.4
1,938,589 - PGA1_c18680 0.24 +0.1
1,938,589 - PGA1_c18680 0.24 -2.1
1,938,610 + PGA1_c18680 0.26 +1.6
1,938,610 + PGA1_c18680 0.26 -0.4
1,938,610 + PGA1_c18680 0.26 -2.1
1,938,618 - PGA1_c18680 0.27 +0.2
1,938,618 - PGA1_c18680 0.27 +1.4
1,938,618 - PGA1_c18680 0.27 -1.2
1,938,645 - PGA1_c18680 0.30 -0.2
1,938,679 - PGA1_c18680 0.33 +1.6
1,938,679 - PGA1_c18680 0.33 +1.6
1,938,679 - PGA1_c18680 0.33 -2.9
1,938,706 + PGA1_c18680 0.36 -0.9
1,938,714 - PGA1_c18680 0.37 +1.8
1,938,717 + PGA1_c18680 0.37 -0.1
1,938,757 + PGA1_c18680 0.41 -1.5
1,938,772 + PGA1_c18680 0.42 +2.2
1,938,781 - PGA1_c18680 0.43 -2.5
1,938,781 - PGA1_c18680 0.43 +0.3
1,938,806 + PGA1_c18680 0.46 +0.7
1,938,814 - PGA1_c18680 0.47 +2.2
1,938,821 + PGA1_c18680 0.47 -0.4
1,938,827 + PGA1_c18680 0.48 +0.3
1,938,827 + PGA1_c18680 0.48 +0.4
1,938,853 + PGA1_c18680 0.50 +0.6
1,938,860 + PGA1_c18680 0.51 +2.1
1,938,914 + PGA1_c18680 0.56 +0.1
1,938,922 - PGA1_c18680 0.57 +1.2
1,938,985 - PGA1_c18680 0.64 -1.3
1,938,985 - PGA1_c18680 0.64 +1.2
1,938,985 - PGA1_c18680 0.64 +0.4
1,939,013 + PGA1_c18680 0.66 +2.6
1,939,013 + PGA1_c18680 0.66 +0.3
1,939,021 - PGA1_c18680 0.67 +0.3
1,939,021 - PGA1_c18680 0.67 -1.2
1,939,021 - PGA1_c18680 0.67 +0.8
1,939,021 - PGA1_c18680 0.67 -2.6
1,939,021 - PGA1_c18680 0.67 +0.6
1,939,021 - PGA1_c18680 0.67 +1.1
1,939,021 - PGA1_c18680 0.67 +0.3
1,939,047 + PGA1_c18680 0.70 +1.6
1,939,059 + PGA1_c18680 0.71 +0.4
1,939,095 + PGA1_c18680 0.75 -1.2
1,939,097 + PGA1_c18680 0.75 +1.3
1,939,097 + +0.1
1,939,097 + PGA1_c18680 0.75 +0.1
1,939,097 + PGA1_c18680 0.75 +0.0
1,939,105 - PGA1_c18680 0.76 -1.5
1,939,105 - PGA1_c18680 0.76 -0.3
1,939,105 - PGA1_c18680 0.76 -2.5
1,939,105 - PGA1_c18680 0.76 -0.7
1,939,120 + PGA1_c18680 0.77 -1.2
1,939,122 + PGA1_c18680 0.77 -2.4
1,939,122 + PGA1_c18680 0.77 -0.2
1,939,184 - PGA1_c18680 0.83 +0.5
1,939,187 + PGA1_c18680 0.84 -2.2
1,939,331 - -0.9
1,939,340 - +2.1
1,939,340 - +0.5
1,939,626 + -1.7
1,939,634 - -2.9
1,939,661 - +0.5
1,939,663 + +0.6
1,939,671 - +2.7
1,939,671 - -1.7
1,939,674 - -0.1
1,939,707 + +1.2
1,939,881 + PGA1_c18700 0.14 +0.4
1,939,912 + PGA1_c18700 0.16 +1.0
1,939,919 + PGA1_c18700 0.16 -0.3
1,939,920 - PGA1_c18700 0.16 -2.9
1,940,119 - PGA1_c18700 0.28 +1.7
1,940,170 + PGA1_c18700 0.31 +1.8
1,940,176 + PGA1_c18700 0.31 +3.2
1,940,185 - PGA1_c18700 0.32 +2.1
1,940,188 + PGA1_c18700 0.32 +0.7
1,940,251 - PGA1_c18700 0.36 -0.6
1,940,253 - PGA1_c18700 0.36 -2.0
1,940,260 + PGA1_c18700 0.36 -0.3
1,940,268 - PGA1_c18700 0.37 -2.0

Or see this region's nucleotide sequence