Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2435

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2434 and Dshi_2435 are separated by 38 nucleotidesDshi_2435 and Dshi_2436 are separated by 133 nucleotides Dshi_2434: Dshi_2434 - rhamnose ABC transporter, periplasmic rhamnose-binding protein (RefSeq), at 2,575,507 to 2,576,508 _2434 Dshi_2435: Dshi_2435 - transcriptional regulator, DeoR family (RefSeq), at 2,576,547 to 2,577,401 _2435 Dshi_2436: Dshi_2436 - rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) (from data), at 2,577,535 to 2,579,637 _2436 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -1 0 1at 2575.592 kb on - strandat 2575.772 kb on - strand, within Dshi_2434at 2575.813 kb on + strand, within Dshi_2434at 2575.928 kb on - strand, within Dshi_2434at 2576.026 kb on + strand, within Dshi_2434at 2576.054 kb on + strand, within Dshi_2434at 2576.111 kb on + strand, within Dshi_2434at 2576.158 kb on + strand, within Dshi_2434at 2576.189 kb on + strand, within Dshi_2434at 2576.299 kb on - strand, within Dshi_2434at 2576.315 kb on - strand, within Dshi_2434at 2576.320 kb on - strand, within Dshi_2434at 2576.430 kb on + strandat 2576.466 kb on + strandat 2576.473 kb on - strandat 2576.572 kb on + strandat 2576.572 kb on + strandat 2576.580 kb on - strandat 2576.580 kb on - strandat 2576.684 kb on + strand, within Dshi_2435at 2576.796 kb on - strand, within Dshi_2435at 2576.926 kb on + strand, within Dshi_2435at 2576.929 kb on - strand, within Dshi_2435at 2576.974 kb on - strand, within Dshi_2435at 2576.990 kb on - strand, within Dshi_2435at 2577.248 kb on - strand, within Dshi_2435at 2577.283 kb on - strand, within Dshi_2435at 2577.363 kb on + strandat 2577.477 kb on - strandat 2577.484 kb on + strandat 2577.569 kb on - strandat 2577.693 kb on + strandat 2577.709 kb on - strandat 2577.747 kb on + strand, within Dshi_2436at 2577.810 kb on - strand, within Dshi_2436at 2577.814 kb on - strand, within Dshi_2436at 2577.881 kb on + strand, within Dshi_2436at 2577.881 kb on - strand, within Dshi_2436at 2577.927 kb on - strand, within Dshi_2436at 2577.927 kb on - strand, within Dshi_2436at 2577.957 kb on + strand, within Dshi_2436at 2578.007 kb on + strand, within Dshi_2436at 2578.040 kb on + strand, within Dshi_2436at 2578.152 kb on - strand, within Dshi_2436at 2578.352 kb on + strand, within Dshi_2436at 2578.355 kb on - strand, within Dshi_2436at 2578.360 kb on - strand, within Dshi_2436at 2578.381 kb on + strand, within Dshi_2436

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,575,592 - -0.1
2,575,772 - Dshi_2434 0.26 -0.5
2,575,813 + Dshi_2434 0.31 +0.1
2,575,928 - Dshi_2434 0.42 -0.2
2,576,026 + Dshi_2434 0.52 +0.1
2,576,054 + Dshi_2434 0.55 -0.5
2,576,111 + Dshi_2434 0.60 +0.6
2,576,158 + Dshi_2434 0.65 +0.2
2,576,189 + Dshi_2434 0.68 +0.0
2,576,299 - Dshi_2434 0.79 -0.1
2,576,315 - Dshi_2434 0.81 +0.1
2,576,320 - Dshi_2434 0.81 -0.4
2,576,430 + -0.9
2,576,466 + +0.4
2,576,473 - +0.2
2,576,572 + +0.6
2,576,572 + -0.7
2,576,580 - +0.4
2,576,580 - -0.3
2,576,684 + Dshi_2435 0.16 -1.2
2,576,796 - Dshi_2435 0.29 +0.0
2,576,926 + Dshi_2435 0.44 -1.1
2,576,929 - Dshi_2435 0.45 +0.2
2,576,974 - Dshi_2435 0.50 -1.7
2,576,990 - Dshi_2435 0.52 +0.0
2,577,248 - Dshi_2435 0.82 -0.8
2,577,283 - Dshi_2435 0.86 -1.4
2,577,363 + +0.8
2,577,477 - -0.6
2,577,484 + +1.6
2,577,569 - -1.4
2,577,693 + -0.5
2,577,709 - -0.8
2,577,747 + Dshi_2436 0.10 -0.9
2,577,810 - Dshi_2436 0.13 -0.4
2,577,814 - Dshi_2436 0.13 -0.2
2,577,881 + Dshi_2436 0.16 +0.0
2,577,881 - Dshi_2436 0.16 -0.2
2,577,927 - Dshi_2436 0.19 -0.2
2,577,927 - Dshi_2436 0.19 +0.2
2,577,957 + Dshi_2436 0.20 -0.0
2,578,007 + Dshi_2436 0.22 +0.3
2,578,040 + Dshi_2436 0.24 +0.1
2,578,152 - Dshi_2436 0.29 +0.4
2,578,352 + Dshi_2436 0.39 -0.3
2,578,355 - Dshi_2436 0.39 -0.3
2,578,360 - Dshi_2436 0.39 -0.5
2,578,381 + Dshi_2436 0.40 -0.0

Or see this region's nucleotide sequence