Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1741

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1740 and Dshi_1741 are separated by 35 nucleotidesDshi_1741 and Dshi_1742 are separated by 95 nucleotides Dshi_1740: Dshi_1740 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,807,000 to 1,808,001 _1740 Dshi_1741: Dshi_1741 - hypothetical protein (RefSeq), at 1,808,037 to 1,808,192 _1741 Dshi_1742: Dshi_1742 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,808,288 to 1,809,310 _1742 Position (kb) 1808 1809Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1807.043 kb on + strandat 1807.267 kb on - strand, within Dshi_1740at 1807.576 kb on + strand, within Dshi_1740at 1807.595 kb on - strand, within Dshi_1740at 1807.697 kb on + strand, within Dshi_1740at 1807.731 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.913 kb on - strandat 1808.109 kb on + strand, within Dshi_1741

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,807,043 + -4.3
1,807,267 - Dshi_1740 0.27 -3.8
1,807,576 + Dshi_1740 0.57 -4.7
1,807,595 - Dshi_1740 0.59 -3.5
1,807,697 + Dshi_1740 0.70 -5.7
1,807,731 - Dshi_1740 0.73 -3.5
1,807,818 - Dshi_1740 0.82 -4.5
1,807,818 - Dshi_1740 0.82 -3.4
1,807,818 - Dshi_1740 0.82 -2.7
1,807,913 - -1.4
1,808,109 + Dshi_1741 0.46 +0.3

Or see this region's nucleotide sequence