Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1739 and Dshi_1740 are separated by 242 nucleotides Dshi_1740 and Dshi_1741 are separated by 35 nucleotides Dshi_1741 and Dshi_1742 are separated by 95 nucleotides
Dshi_1739: Dshi_1739 - protein of unknown function DUF808 (RefSeq), at 1,805,810 to 1,806,757
_1739
Dshi_1740: Dshi_1740 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,807,000 to 1,808,001
_1740
Dshi_1741: Dshi_1741 - hypothetical protein (RefSeq), at 1,808,037 to 1,808,192
_1741
Dshi_1742: Dshi_1742 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,808,288 to 1,809,310
_1742
Position (kb)
1806
1807
1808
1809 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1806.009 kb on - strand, within Dshi_1739 at 1806.345 kb on + strand, within Dshi_1739 at 1806.716 kb on - strand at 1806.916 kb on + strand at 1807.043 kb on + strand at 1807.267 kb on - strand, within Dshi_1740 at 1807.576 kb on + strand, within Dshi_1740 at 1807.595 kb on - strand, within Dshi_1740 at 1807.697 kb on + strand, within Dshi_1740 at 1807.731 kb on - strand, within Dshi_1740 at 1807.818 kb on - strand, within Dshi_1740 at 1807.818 kb on - strand, within Dshi_1740 at 1807.818 kb on - strand, within Dshi_1740 at 1807.913 kb on - strand at 1808.109 kb on + strand, within Dshi_1741
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,806,009 - Dshi_1739 0.21 -0.2 1,806,345 + Dshi_1739 0.56 +0.5 1,806,716 - -0.0 1,806,916 + -2.9 1,807,043 + -4.3 1,807,267 - Dshi_1740 0.27 -3.8 1,807,576 + Dshi_1740 0.57 -4.7 1,807,595 - Dshi_1740 0.59 -3.5 1,807,697 + Dshi_1740 0.70 -5.7 1,807,731 - Dshi_1740 0.73 -3.5 1,807,818 - Dshi_1740 0.82 -4.5 1,807,818 - Dshi_1740 0.82 -3.4 1,807,818 - Dshi_1740 0.82 -2.7 1,807,913 - -1.4 1,808,109 + Dshi_1741 0.46 +0.3
Or see this region's nucleotide sequence