Experiment: m.b. pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_925 and HP15_926 are separated by 78 nucleotides HP15_926 and HP15_927 overlap by 4 nucleotides HP15_927 and HP15_928 are separated by 78 nucleotides
HP15_925: HP15_925 - alpha/beta hydrolase fold protein, at 939,345 to 940,022
_925
HP15_926: HP15_926 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,101 to 940,904
_926
HP15_927: HP15_927 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,901 to 941,623
_927
HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907
_928
Position (kb) 940
941
942 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 940.102 kb on + strand at 940.134 kb on - strand at 940.286 kb on + strand, within HP15_926 at 940.299 kb on + strand, within HP15_926 at 940.307 kb on - strand, within HP15_926 at 940.423 kb on - strand, within HP15_926 at 940.474 kb on + strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.642 kb on + strand, within HP15_926 at 940.686 kb on + strand, within HP15_926 at 940.692 kb on + strand, within HP15_926 at 940.709 kb on - strand, within HP15_926 at 940.753 kb on + strand, within HP15_926 at 940.771 kb on - strand, within HP15_926 at 940.772 kb on - strand, within HP15_926 at 940.986 kb on + strand, within HP15_927 at 940.997 kb on + strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.020 kb on - strand, within HP15_927 at 941.053 kb on - strand, within HP15_927 at 941.097 kb on + strand, within HP15_927 at 941.256 kb on + strand, within HP15_927 at 941.288 kb on - strand, within HP15_927 at 941.313 kb on + strand, within HP15_927 at 941.413 kb on + strand, within HP15_927 at 941.441 kb on - strand, within HP15_927 at 941.479 kb on + strand, within HP15_927 at 941.505 kb on + strand, within HP15_927 at 941.537 kb on + strand, within HP15_927 at 941.545 kb on - strand, within HP15_927 at 941.583 kb on + strand at 941.583 kb on + strand at 941.659 kb on + strand at 941.809 kb on + strand at 941.924 kb on - strand, within HP15_928 at 941.970 kb on - strand, within HP15_928 at 942.083 kb on + strand, within HP15_928 at 942.194 kb on + strand, within HP15_928 at 942.264 kb on + strand, within HP15_928 at 942.268 kb on - strand, within HP15_928 at 942.311 kb on + strand, within HP15_928 at 942.311 kb on + strand, within HP15_928 at 942.354 kb on + strand, within HP15_928 at 942.389 kb on + strand, within HP15_928 at 942.395 kb on + strand, within HP15_928 at 942.426 kb on + strand, within HP15_928 at 942.474 kb on - strand, within HP15_928 at 942.511 kb on - strand, within HP15_928 at 942.511 kb on - strand, within HP15_928 at 942.572 kb on - strand, within HP15_928 at 942.617 kb on + strand, within HP15_928
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH7 remove 940,102 + +0.8 940,134 - +0.8 940,286 + HP15_926 0.23 -0.4 940,299 + HP15_926 0.25 -0.1 940,307 - HP15_926 0.26 +0.4 940,423 - HP15_926 0.40 -0.1 940,474 + HP15_926 0.46 +1.0 940,482 - HP15_926 0.47 +0.2 940,482 - HP15_926 0.47 -0.0 940,642 + HP15_926 0.67 -1.3 940,686 + HP15_926 0.73 +0.6 940,692 + HP15_926 0.74 +0.1 940,709 - HP15_926 0.76 -0.1 940,753 + HP15_926 0.81 -0.4 940,771 - HP15_926 0.83 -1.0 940,772 - HP15_926 0.83 -2.5 940,986 + HP15_927 0.12 +0.7 940,997 + HP15_927 0.13 +0.5 941,005 - HP15_927 0.14 +0.6 941,005 - HP15_927 0.14 +1.0 941,020 - HP15_927 0.16 -0.7 941,053 - HP15_927 0.21 +0.9 941,097 + HP15_927 0.27 +3.1 941,256 + HP15_927 0.49 +0.2 941,288 - HP15_927 0.54 +0.3 941,313 + HP15_927 0.57 +0.2 941,413 + HP15_927 0.71 -0.0 941,441 - HP15_927 0.75 -0.1 941,479 + HP15_927 0.80 +0.3 941,505 + HP15_927 0.84 +0.5 941,537 + HP15_927 0.88 -0.2 941,545 - HP15_927 0.89 +0.6 941,583 + +0.5 941,583 + +0.2 941,659 + -0.1 941,809 + +0.9 941,924 - HP15_928 0.18 -0.7 941,970 - HP15_928 0.22 +0.9 942,083 + HP15_928 0.32 -0.3 942,194 + HP15_928 0.41 -0.1 942,264 + HP15_928 0.47 +0.4 942,268 - HP15_928 0.47 -0.1 942,311 + HP15_928 0.50 +0.0 942,311 + HP15_928 0.50 -0.3 942,354 + HP15_928 0.54 +0.2 942,389 + HP15_928 0.57 +0.6 942,395 + HP15_928 0.57 +1.3 942,426 + HP15_928 0.60 +0.4 942,474 - HP15_928 0.64 +0.4 942,511 - HP15_928 0.67 +0.7 942,511 - HP15_928 0.67 +0.3 942,572 - HP15_928 0.72 +0.9 942,617 + HP15_928 0.76 -0.3
Or see this region's nucleotide sequence