Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0962 and Psest_0963 are separated by 203 nucleotides Psest_0963 and Psest_0964 are separated by 99 nucleotides Psest_0964 and Psest_0965 are separated by 122 nucleotides
Psest_0962: Psest_0962 - DNA repair protein RecN, at 1,041,809 to 1,043,482
_0962
Psest_0963: Psest_0963 - Molecular chaperone GrpE (heat shock protein), at 1,043,686 to 1,044,255
_0963
Psest_0964: Psest_0964 - chaperone protein DnaK, at 1,044,355 to 1,046,268
_0964
Psest_0965: Psest_0965 - chaperone protein DnaJ, at 1,046,391 to 1,047,521
_0965
Position (kb)
1044
1045
1046
1047 Strain fitness (log2 ratio)
-1
0
1 at 1043.454 kb on + strand at 1043.455 kb on - strand at 1043.497 kb on + strand at 1043.518 kb on - strand at 1043.520 kb on - strand at 1043.541 kb on - strand at 1043.541 kb on - strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.669 kb on + strand at 1043.671 kb on + strand at 1046.161 kb on + strand at 1046.161 kb on + strand at 1046.161 kb on + strand at 1046.161 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.266 kb on + strand at 1046.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,043,454 + -0.2 1,043,455 - -0.7 1,043,497 + -0.6 1,043,518 - -0.4 1,043,520 - +0.1 1,043,541 - -0.5 1,043,541 - -0.7 1,043,633 + -0.1 1,043,633 + +0.2 1,043,633 + +0.3 1,043,633 + -0.2 1,043,633 + -0.3 1,043,669 + -0.2 1,043,671 + -0.4 1,046,161 + -0.3 1,046,161 + +0.2 1,046,161 + -0.6 1,046,161 + +0.1 1,046,266 + -0.7 1,046,266 + +0.0 1,046,266 + -0.4 1,046,266 + -1.0 1,046,266 + -0.4 1,046,266 + -0.3 1,046,266 + -0.5 1,046,266 + +0.5 1,046,386 + -0.8
Or see this region's nucleotide sequence